Construct: ORF ccsbBroad304_13519

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005445.1_s304c1, BRDN0000404834
Derived from:
ccsbBroadEn_13519
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC26A11 (284129)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13519
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 284129 SLC26A11 solute carrier family 26 me... NM_001166347.2 97.1% 97% 1_51del;1747G>A
2 human 284129 SLC26A11 solute carrier family 26 me... NM_001166348.2 97.1% 97% 1_51del;1747G>A
3 human 284129 SLC26A11 solute carrier family 26 me... NM_001166349.2 97.1% 97% 1_51del;1747G>A
4 human 284129 SLC26A11 solute carrier family 26 me... NM_173626.4 97.1% 97% 1_51del;1747G>A
5 human 284129 SLC26A11 solute carrier family 26 me... XM_006721833.2 93.4% 93.3% 1_51del;427_498del;1819G>A
6 human 284129 SLC26A11 solute carrier family 26 me... XM_017024507.1 93.4% 93.3% 1_51del;427_498del;1819G>A
7 human 284129 SLC26A11 solute carrier family 26 me... XM_017024505.1 84.5% 84.4% 1_249del;625_696del;2017G>A
8 human 284129 SLC26A11 solute carrier family 26 me... XM_017024506.1 81.5% 80.7% (many diffs)
9 human 284129 SLC26A11 solute carrier family 26 me... XM_011524654.1 74.8% 57.2% 0_1ins301;238_239ins143;1252G>A
10 human 284129 SLC26A11 solute carrier family 26 me... XM_024450711.1 74.8% 57.2% 0_1ins301;238_239ins143;1252G>A
11 human 284129 SLC26A11 solute carrier family 26 me... XM_024450710.1 71.8% 66.2% (many diffs)
12 human 284129 SLC26A11 solute carrier family 26 me... XR_001752499.1 62% (many diffs)
13 human 284129 SLC26A11 solute carrier family 26 me... XR_001752498.1 33.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1833
ORF length:
1767
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc cccgagcgcc tgctgctgct cccctgcggc cctgcagagg aggctgccca
121tcctggcgtg gctgcccagc tactccctgc agtggctgaa gatggatttc gtcgccggcc
181tctcagttgg cctcactgcc attccccagg cgctggccta tgctgaagtg gctggactcc
241cgccccagta tggcctctac tctgccttca tgggctgctt cgtgtatttc ttcctgggca
301cctcccggga tgtgactctg ggccccaccg ccattatgtc cctcctggtc tccttctaca
361ccttccatga gcccgcctac gctgtgctgc tggccttcct gtccggctgc atccagctgg
421ccatgggggt cctgcgtttg gggttcctgc tggacttcat ttcctacccc gtcattaaag
481gcttcacctc tgctgctgcc gtcaccatcg gctttggaca gatcaagaac ctgctgggac
541tacagaacat ccccaggccg ttcttcctgc aggtgtacca caccttcctc aggattgcag
601agaccagggt aggtgacgcc gtcctggggc tggtctgcat gctgctgctg ctggtgctga
661agctgatgcg ggaccacgtg cctcccgtcc accccgagat gccccctggt gtgcggctca
721gccgtgggct ggtctgggct gccacgacag ctcgcaacgc cctggtggtc tccttcgcag
781ccctggttgc gtactccttc gaggtgactg gataccagcc tttcatccta acaggggaga
841cagctgaggg gctccctcca gtccggatcc cgcccttctc agtgaccaca gccaacggga
901cgatctcctt caccgagatg gtgcaggaca tgggagccgg gctggccgtg gtgcccctga
961tgggcctcct ggagagcatt gcggtggcca aagccttcgc atctcagaat aattaccgca
1021tcgatgccaa ccaggagctg ctggccatcg gtctcaccaa catgttgggc tccctcgtct
1081cctcctaccc ggtcacaggc agctttggac ggacagccgt gaacgctcag tcgggggtgt
1141gcaccccggc ggggggcctg gtgacgggag tgctggtgct gctgtctctg gactacctga
1201cctcactgtt ctactacatc cccaagtctg ccctggctgc cgtcatcatc atggccgtgg
1261ccccgctgtt cgacaccaag atcttcagga cgctctggcg tgttaagagg ctggacctgc
1321tgcccctgtg cgtgaccttc ctgctgtgct tctgggaggt gcagtacggc atcctggccg
1381gggccctggt gtctctgctc atgctcctgc actctgcagc caggcctgag accaaggtgt
1441cagaggggcc ggttctggtc ctgcagccgg ccagcggcct gtccttccct gccatggagg
1501ctctgcggga ggagatccta agccgggccc tggaagtgtc cccgccacgc tgcctggtcc
1561tggagtgcac ccatgtctgc agcatcgact acactgtggt gctgggactc ggcgagctcc
1621tccaggactt ccagaagcag ggcgtcgccc tggcctttgt gggcctgcag gtccccgttc
1681tccgtgtcct gctgtccgct gacctgaagg ggttccagta cttctctacc ctggaagaag
1741cagagaagca cctgaggcag aagccaggga cccagcccta caacatcaga gaagactcca
1801ttctggacca aaaggttgcc ctgctcaagg catacccaac tttcttgtac aaagtggttg
1861gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
1921accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)