Construct: ORF ccsbBroad304_13634
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011631.1_s304c1, BRDN0000407801
- Derived from:
- ccsbBroadEn_13634
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD36 (375248)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13634
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | NM_198555.4 | 100% | 100% | |
| 2 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | NM_001353337.2 | 91% | 89.5% | (many diffs) |
| 3 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_011511557.3 | 18.1% | 17.7% | (many diffs) |
| 4 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_011511558.2 | 18.1% | 17.7% | (many diffs) |
| 5 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_011511555.2 | 17.8% | 17.5% | (many diffs) |
| 6 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_011511556.2 | 17.8% | 17.5% | (many diffs) |
| 7 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XR_002959321.1 | 12.6% | (many diffs) | |
| 8 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XR_001738869.2 | 11.8% | (many diffs) | |
| 9 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_011511131.1 | 11.8% | 11.7% | 487delT;490_4131delinsA |
| 10 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_017004584.2 | 11.7% | 11.4% | (many diffs) |
| 11 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_017004583.2 | 11.2% | 10.9% | (many diffs) |
| 12 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_017004579.2 | 11.1% | 10.8% | (many diffs) |
| 13 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_017004580.2 | 11.1% | 10.8% | (many diffs) |
| 14 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_017004581.2 | 11.1% | 10.8% | (many diffs) |
| 15 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_017004582.2 | 11.1% | 10.8% | (many diffs) |
| 16 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_017004578.2 | 10.8% | 10.6% | (many diffs) |
| 17 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | NM_025190.3 | 10.8% | 10.6% | (many diffs) |
| 18 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_005263995.5 | 10.8% | 10.6% | (many diffs) |
| 19 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_006712661.2 | 10.8% | 10.6% | (many diffs) |
| 20 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XR_001738741.1 | 10.4% | 1_554del;1041delT;1044_4670delinsA | |
| 21 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004044.1 | 9.1% | 9.1% | 487delT;490_5337delinsA |
| 22 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004045.1 | 9.1% | 9.1% | 487delT;490_5337delinsA |
| 23 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004039.1 | 8.9% | 8.9% | 487delT;490_5439delinsA |
| 24 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004040.1 | 8.9% | 8.9% | 487delT;490_5439delinsA |
| 25 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004041.1 | 8.9% | 8.9% | 487delT;490_5439delinsA |
| 26 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004043.1 | 8.9% | 8.9% | 487delT;490_5439delinsA |
| 27 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004025.1 | 8.8% | 8.7% | 487delT;490_5541delinsA |
| 28 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004026.1 | 8.8% | 8.7% | 487delT;490_5541delinsA |
| 29 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004027.1 | 8.8% | 8.7% | 487delT;490_5541delinsA |
| 30 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004028.1 | 8.8% | 8.7% | 487delT;490_5541delinsA |
| 31 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004030.1 | 8.8% | 8.7% | 487delT;490_5541delinsA |
| 32 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004031.1 | 8.8% | 8.7% | 487delT;490_5541delinsA |
| 33 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004032.1 | 8.8% | 8.7% | 487delT;490_5541delinsA |
| 34 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004033.1 | 8.8% | 8.7% | 487delT;490_5541delinsA |
| 35 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004034.1 | 8.8% | 8.7% | 487delT;490_5541delinsA |
| 36 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004035.1 | 8.8% | 8.7% | 487delT;490_5541delinsA |
| 37 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004036.1 | 8.8% | 8.7% | 487delT;490_5541delinsA |
| 38 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004037.1 | 8.8% | 8.7% | 487delT;490_5541delinsA |
| 39 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_024452877.1 | 8.8% | 8.7% | 487delT;490_5541delinsA |
| 40 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004024.1 | 8.7% | 8.6% | 487delT;490_5607delinsA |
| 41 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004011.1 | 8.6% | 8.6% | 487delT;490_5643delinsA |
| 42 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004012.1 | 8.6% | 8.6% | 487delT;490_5643delinsA |
| 43 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004013.1 | 8.6% | 8.6% | 487delT;490_5643delinsA |
| 44 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004014.1 | 8.6% | 8.6% | 487delT;490_5643delinsA |
| 45 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004015.1 | 8.6% | 8.6% | 487delT;490_5643delinsA |
| 46 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004016.1 | 8.6% | 8.6% | 487delT;490_5643delinsA |
| 47 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004017.1 | 8.6% | 8.6% | 487delT;490_5643delinsA |
| 48 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004018.1 | 8.6% | 8.6% | 487delT;490_5643delinsA |
| 49 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004019.1 | 8.6% | 8.6% | 487delT;490_5643delinsA |
| 50 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004020.1 | 8.6% | 8.6% | 487delT;490_5643delinsA |
| 51 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004021.1 | 8.6% | 8.6% | 487delT;490_5643delinsA |
| 52 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004022.1 | 8.6% | 8.6% | 487delT;490_5643delinsA |
| 53 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004023.1 | 8.6% | 8.6% | 487delT;490_5643delinsA |
| 54 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004010.1 | 8.4% | 8.4% | 487delT;490_5742delinsA |
| 55 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | NM_001354587.1 | 8.4% | 8.4% | 487delT;490_5745delinsA |
| 56 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_006712514.3 | 8.4% | 8.4% | 487delT;490_5745delinsA |
| 57 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004009.1 | 8.4% | 8.4% | 487delT;490_5745delinsA |
| 58 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XR_922976.2 | 8.2% | (many diffs) | |
| 59 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XR_002959292.1 | 7.9% | 1_554del;1041delT;1044_6164delinsA | |
| 60 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XR_002959293.1 | 7.5% | 1_554del;1041delT;1044_6501delinsA | |
| 61 | human | 400986 | ANKRD36C | ankyrin repeat domain 36C | NM_001310154.3 | 7.1% | 6.4% | (many diffs) |
| 62 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XR_002959294.1 | 5.4% | 1_554del;1041delT;1044_9034delinsA | |
| 63 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XR_922917.2 | 4.7% | 1_554del;1041delT;1044_10338delinsA | |
| 64 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XR_001738739.2 | 4.4% | 1_554del;1041delT;1044_10935delinsA |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 555
- ORF length:
- 489
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga agacggcaag cgggagaggt ggcccaccct catggagcgc ttgtgctcgg 121 atggcttcgc atttccccaa taccccatta aaccgtatca tctgaagagg atccacagag 181 ctgtcttaca tggtaatcta gagaaactga agtaccttct gctcacgtat tatgacgcca 241 ataagagaga caggaaggaa aggaccgccc tacatttggc ctgtgccact ggccaaccgg 301 aaatggtaca tctcctggtg tccagaagat gtgagcttaa cctctgcgac cgtgaagaca 361 ggacacctct gatcaaggct gtacaactga ggcaggaggc ttgtgcaact cttctgctgc 421 aaaatggcgc caatccaaat attacggatt tctttggaag gactgctctg cactacgctg 481 tgtataatga agatacatcc atgatagaaa aacttctttc acatggtaca aatattgaag 541 aatgcagcaa ggtataccca actttcttgt acaaagtggt tggtaagcct atccctaacc 601 ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt 661 cgacaatcaa cctctggatt a