Transcript: Human XM_011511556.2

PREDICTED: Homo sapiens ankyrin repeat domain 36B (ANKRD36B), transcript variant X18, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ANKRD36B (57730)
Length:
3667
CDS:
180..2627

Additional Resources:

NCBI RefSeq record:
XM_011511556.2
NBCI Gene record:
ANKRD36B (57730)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011511556.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000152758 GCTACAAGTGACGACAAAGAT pLKO.1 972 CDS 100% 5.625 2.813 Y ANKRD36C n/a
2 TRCN0000154273 GCTACAAGTGACGAGAAAGAT pLKO.1 1074 CDS 100% 5.625 2.813 Y ANKRD36C n/a
3 TRCN0000365722 TACCTTCTGCTCACGTATTAT pLKO_005 291 CDS 100% 0.000 0.000 Y ANKRD36 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011511556.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13635 pDONR223 100% 33.6% 29.4% None (many diffs) n/a
2 ccsbBroad304_13635 pLX_304 0% 33.6% 29.4% V5 (many diffs) n/a
3 TRCN0000477157 GACCCTGATCACACCATGCTACCG pLX_317 46.7% 33.6% 29.4% V5 (many diffs) n/a
4 ccsbBroadEn_12402 pDONR223 100% 29.2% 28.4% None (many diffs) n/a
5 ccsbBroad304_12402 pLX_304 0% 29.2% 28.4% V5 (many diffs) n/a
6 TRCN0000472675 CCTGTATGAGCGAGTCCAAGCGTC pLX_317 56.9% 29.2% 28.4% V5 (many diffs) n/a
7 ccsbBroadEn_13634 pDONR223 100% 17.8% 17.5% None (many diffs) n/a
8 ccsbBroad304_13634 pLX_304 0% 17.8% 17.5% V5 (many diffs) n/a
9 TRCN0000479689 CACCCTTTACACGGATAGCGCCAG pLX_317 73% 17.8% 17.5% V5 (many diffs) n/a
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