Transcript: Human XR_001738739.2

PREDICTED: Homo sapiens ankyrin repeat domain 36 (ANKRD36), transcript variant X19, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ANKRD36 (375248)
Length:
10935
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001738739.2
NBCI Gene record:
ANKRD36 (375248)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001738739.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000151047 GATACAAGTGACAAGGATGAT pLKO.1 1485 3UTR 100% 4.950 3.465 N ANKRD36 n/a
2 TRCN0000370948 TTACGAACAGAAGGACTATTT pLKO_005 1834 3UTR 100% 13.200 7.920 N ANKRD36 n/a
3 TRCN0000155910 CCACAAGTGATGAGAAGGATT pLKO.1 3340 3UTR 100% 4.950 2.970 N ANKRD36 n/a
4 TRCN0000365720 TCGCGTCACTGCACCTATTTA pLKO_005 6039 3UTR 100% 15.000 7.500 Y ANKRD36 n/a
5 TRCN0000242962 ATACTTAACTGCCATGATAAT pLKO_005 7219 3UTR 100% 13.200 6.600 Y ANKRD36B n/a
6 TRCN0000257013 CACTCCCTGTTGCTCACATTA pLKO_005 7546 3UTR 100% 13.200 6.600 Y ANKRD36B n/a
7 TRCN0000370949 CTCCTGAGCAACCGCCTTTAT pLKO_005 1987 3UTR 100% 13.200 6.600 Y ANKRD36 n/a
8 TRCN0000242960 GGGCGGACCGTATCATCTTTA pLKO_005 7115 3UTR 100% 13.200 6.600 Y ANKRD36B n/a
9 TRCN0000242961 TCTGCACTAGAATCTACTAAT pLKO_005 7968 3UTR 100% 13.200 6.600 Y ANKRD36B n/a
10 TRCN0000242959 ACGATGGGACCATCTAGTTAC pLKO_005 7721 3UTR 100% 10.800 5.400 Y ANKRD36B n/a
11 TRCN0000365723 CACGTGCAAAGTGAGCTAAAG pLKO_005 5601 3UTR 100% 10.800 5.400 Y ANKRD36 n/a
12 TRCN0000365719 TCGATGTGATCATGATCAAAG pLKO_005 5384 3UTR 100% 10.800 5.400 Y ANKRD36 n/a
13 TRCN0000152758 GCTACAAGTGACGACAAAGAT pLKO.1 2217 3UTR 100% 5.625 2.813 Y ANKRD36C n/a
14 TRCN0000154273 GCTACAAGTGACGAGAAAGAT pLKO.1 2319 3UTR 100% 5.625 2.813 Y ANKRD36C n/a
15 TRCN0000153451 CACTGTGAGCAACTTAGAGTA pLKO.1 4716 3UTR 100% 4.950 2.475 Y ANKRD36C n/a
16 TRCN0000167527 GAGAAAGCAGAAAGAGAAGTA pLKO.1 5940 3UTR 100% 4.950 2.475 Y ANKRD36B n/a
17 TRCN0000140719 GATCACTTGAGGTCAGGAGTT pLKO.1 8100 3UTR 100% 4.050 2.025 Y P3H4 n/a
18 TRCN0000165299 GATCACTTGAGGTCAGGAGTT pLKO.1 8100 3UTR 100% 4.050 2.025 Y ORAI2 n/a
19 TRCN0000352971 GATCACTTGAGGTCAGGAGTT pLKO_005 8100 3UTR 100% 4.050 2.025 Y P3H4 n/a
20 TRCN0000365722 TACCTTCTGCTCACGTATTAT pLKO_005 702 3UTR 100% 0.000 0.000 Y ANKRD36 n/a
21 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 8784 3UTR 100% 5.625 2.813 Y KLHL30 n/a
22 TRCN0000154147 CGAGGAAGATTCTGTTTCGAT pLKO.1 2738 3UTR 100% 3.000 1.500 Y ANKRD36C n/a
23 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 8784 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001738739.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13635 pDONR223 100% 8.2% None (many diffs) n/a
2 ccsbBroad304_13635 pLX_304 0% 8.2% V5 (many diffs) n/a
3 TRCN0000477157 GACCCTGATCACACCATGCTACCG pLX_317 46.7% 8.2% V5 (many diffs) n/a
4 ccsbBroadEn_12402 pDONR223 100% 6.3% None (many diffs) n/a
5 ccsbBroad304_12402 pLX_304 0% 6.3% V5 (many diffs) n/a
6 TRCN0000472675 CCTGTATGAGCGAGTCCAAGCGTC pLX_317 56.9% 6.3% V5 (many diffs) n/a
7 ccsbBroadEn_13634 pDONR223 100% 4.4% None 1_554del;1041delT;1044_10935delinsA n/a
8 ccsbBroad304_13634 pLX_304 0% 4.4% V5 1_554del;1041delT;1044_10935delinsA n/a
9 TRCN0000479689 CACCCTTTACACGGATAGCGCCAG pLX_317 73% 4.4% V5 1_554del;1041delT;1044_10935delinsA n/a
10 ccsbBroadEn_10271 pDONR223 100% 2.9% None (many diffs) n/a
11 ccsbBroad304_10271 pLX_304 0% 2.9% V5 (many diffs) n/a
12 TRCN0000478647 CGCTGAAAACACGAATTGAACTCC pLX_317 89.1% 2.9% V5 (many diffs) n/a
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