Construct: ORF ccsbBroad304_13681
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003856.1_s304c1, BRDN0000404600
- Derived from:
- ccsbBroadEn_13681
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TBC1D3C (414060)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13681
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525176.2 | 70.2% | 63.4% | (many diffs) |
| 2 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | XM_006722247.2 | 70.1% | 62.9% | (many diffs) |
| 3 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722253.2 | 70.1% | 62.9% | (many diffs) |
| 4 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_011524174.1 | 70.1% | 62.9% | (many diffs) |
| 5 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_006721908.2 | 70% | 62.9% | (many diffs) |
| 6 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_011524185.2 | 70% | 62.7% | (many diffs) |
| 7 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_017030257.1 | 62.6% | 53.1% | (many diffs) |
| 8 | human | 101060321 | TBC1D3G | TBC1 domain family member 3G | NM_001291462.2 | 62.5% | 52.9% | (many diffs) |
| 9 | human | 84218 | TBC1D3F | TBC1 domain family member 3F | NM_032258.5 | 62.5% | 52.2% | (many diffs) |
| 10 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | NM_001123392.3 | 62.5% | 52.7% | (many diffs) |
| 11 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_006722055.2 | 62.5% | 52.7% | (many diffs) |
| 12 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | NM_001291459.2 | 62.4% | 52.4% | (many diffs) |
| 13 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | NM_001369500.1 | 62.4% | 52.4% | (many diffs) |
| 14 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | NM_001291464.1 | 62.4% | 52.2% | (many diffs) |
| 15 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_006722237.2 | 62.4% | 52.2% | (many diffs) |
| 16 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | NM_001291465.1 | 62.3% | 52.4% | (many diffs) |
| 17 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | NM_001001418.6 | 62.3% | 52.2% | (many diffs) |
| 18 | human | 729873 | TBC1D3 | TBC1 domain family member 3 | NM_001123391.3 | 62.3% | 52.2% | (many diffs) |
| 19 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_006722056.2 | 62.3% | 49.4% | (many diffs) |
| 20 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | NM_001291463.1 | 62.3% | 52.2% | (many diffs) |
| 21 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_006722224.3 | 62.3% | 52.2% | (many diffs) |
| 22 | human | 102723859 | TBC1D3E | TBC1 domain family member 3E | NM_001291466.1 | 62.2% | 51.9% | (many diffs) |
| 23 | human | 102723859 | TBC1D3E | TBC1 domain family member 3E | XM_006722254.2 | 62.2% | 51.9% | (many diffs) |
| 24 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_006722239.2 | 62.2% | 48.9% | (many diffs) |
| 25 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | NM_001369501.1 | 62.2% | 49.1% | (many diffs) |
| 26 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722252.3 | 62.2% | 49.1% | (many diffs) |
| 27 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_006721907.3 | 62.1% | 48.9% | (many diffs) |
| 28 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_006722226.3 | 62.1% | 48.9% | (many diffs) |
| 29 | human | 414059 | TBC1D3B | TBC1 domain family member 3B | NM_001001417.6 | 62.1% | 53.1% | (many diffs) |
| 30 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_011547459.2 | 62% | 51.1% | (many diffs) |
| 31 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525175.2 | 61.8% | 50.7% | (many diffs) |
| 32 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | XM_006722244.2 | 61.7% | 50.4% | (many diffs) |
| 33 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722250.2 | 61.7% | 50.4% | (many diffs) |
| 34 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_011524173.1 | 61.7% | 50.4% | (many diffs) |
| 35 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_017024646.1 | 61.7% | 50.4% | (many diffs) |
| 36 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_011524184.2 | 61.7% | 50.2% | (many diffs) |
| 37 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_005257981.3 | 56.4% | 47.8% | (many diffs) |
| 38 | human | 101060321 | TBC1D3G | TBC1 domain family member 3G | XM_005276914.3 | 56.3% | 47.7% | (many diffs) |
| 39 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525172.2 | 56.3% | 47.5% | (many diffs) |
| 40 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525173.2 | 56.3% | 47.5% | (many diffs) |
| 41 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | NM_001369499.1 | 56.3% | 47.2% | (many diffs) |
| 42 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | XM_011524175.2 | 56.3% | 47.2% | (many diffs) |
| 43 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_006722235.2 | 56.2% | 47% | (many diffs) |
| 44 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_006722236.1 | 56.2% | 47% | (many diffs) |
| 45 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722248.2 | 56.2% | 47.2% | (many diffs) |
| 46 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_011524176.2 | 56.2% | 47.2% | (many diffs) |
| 47 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_006721904.2 | 56.2% | 47% | (many diffs) |
| 48 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_011524814.2 | 56.2% | 47% | (many diffs) |
| 49 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_006722223.3 | 56.1% | 47% | (many diffs) |
| 50 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525174.2 | 56% | 44.5% | (many diffs) |
| 51 | human | 414059 | TBC1D3B | TBC1 domain family member 3B | XM_005257980.4 | 56% | 47.8% | (many diffs) |
| 52 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_011524172.1 | 55.9% | 44% | (many diffs) |
| 53 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | XM_006722243.2 | 55.9% | 44.2% | (many diffs) |
| 54 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722249.2 | 55.9% | 44.2% | (many diffs) |
| 55 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_006721905.2 | 55.8% | 44% | (many diffs) |
| 56 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_011524183.2 | 55.8% | 44% | (many diffs) |
| 57 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_017024010.2 | 50.4% | 50.1% | (many diffs) |
| 58 | human | 100510707 | TBC1D3J | TBC1 domain family member 3J | NM_001355571.1 | 50.1% | 36.8% | (many diffs) |
| 59 | human | 440452 | TBC1D3P2 | TBC1 domain family member 3... | NR_027486.1 | 43.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1194
- ORF length:
- 1128
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga cgtggtagag gtcgcgggta gttggtgggc acaagagcga gaggacatca 121 ttatgaaata cgaaaaggga caccgagctg ggctgccaga ggacaagggg cctaagcctt 181 ttcgaagcta caacaacaac gtcgatcatt tggggattgt acatgagacg gagctgcctc 241 ctctgactgc gcgggaggcg aagcaaattc ggcgggagat cagccgaaag agcaagtggg 301 tggatatgct gggagactgg gagaaataca aaagcagcag aaagctcata gatcgagcgt 361 acaagggaat gcccatgaac atccggggcc cgatgtggtc agtcctcctg aacattgagg 421 aaatgaagtt gaaaaacccc ggaagatacc agatcatgaa ggagaagggc aagaggtcat 481 ctgagcacat ccagcgcatc gaccgggaca taagcgggac attaaggaag catatgttct 541 tcagggatcg atacggaacc aagcagcggg aactactcca catcctcctg gcatatgagg 601 agtataaccc ggaggtgggc tactgcaggg acctgagcca catcgccgcc ttgttcctcc 661 tctatcttcc tgaggaggat gcattctggg cactggtgca gctgctggcc agtgagaggc 721 actccctgca gggatttcac agcccaaatg gcgggaccgt ccaggggctc caagaccaac 781 aggagcatgt ggtagccacg tcacaatcca agaccatggg gcatcaggac aagaaagatc 841 tatgtgggca gtgttccccg ttaggctgcc tcatccggat attgattgac ggggtaagga 901 ggcataggga gaccctggct cagggacctt ccttgccctg cagtgccctg cttccccagc 961 ccgggggtct ggctcactcc cagcccacag gaggctcagg cgggtcccca aaggacacac 1021 aagcaaaacc ctctgcccaa gaggggtcat cccagggcaa tggctggggc tcaggcccag 1081 cctcatgggc agactgggcc aggacccgac ttgagagggc tcagggaagc ctcaagccct 1141 gggcaagccc ctctctccag gagccacatc cccactcaaa tgagtgcccc ccatgcccaa 1201 ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta 1261 cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta