Construct: ORF ccsbBroad304_13803

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008408.1_s304c1, BRDN0000408418
Derived from:
ccsbBroadEn_13803
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13803
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22981 NINL ninein like XM_011529198.1 8.5% 7.2% (many diffs)
2 human 22981 NINL ninein like XM_011529197.2 8.3% 7.1% (many diffs)
3 human 22981 NINL ninein like XM_017027735.1 8.3% 7.1% (many diffs)
4 human 22981 NINL ninein like XM_017027734.1 7.7% 6.5% (many diffs)
5 human 22981 NINL ninein like XM_011529195.3 7.1% 6.1% (many diffs)
6 human 22981 NINL ninein like XM_011529194.2 6.7% 5.7% (many diffs)
7 human 22981 NINL ninein like NM_001318226.1 6.6% 5.7% (many diffs)
8 human 22981 NINL ninein like XM_011529193.1 6.6% 5.6% (many diffs)
9 human 22981 NINL ninein like XM_011529192.2 6.3% 5.4% (many diffs)
10 human 22981 NINL ninein like XM_017027733.1 5.3% 4.5% (many diffs)
11 human 22981 NINL ninein like XM_011529191.1 5.3% 4.5% (many diffs)
12 human 22981 NINL ninein like NM_025176.6 5% 4.2% (many diffs)
13 human 22981 NINL ninein like XM_011529190.1 4.9% 4.2% (many diffs)
14 human 22981 NINL ninein like XM_011529188.1 4.7% 4% (many diffs)
15 human 22981 NINL ninein like XM_011529189.1 4.7% 4% (many diffs)
16 human 22981 NINL ninein like XM_011529187.2 4.7% 4% (many diffs)
17 human 22981 NINL ninein like XM_011529186.2 4.7% 4% (many diffs)
18 human 22981 NINL ninein like XM_017027732.1 4.7% 4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
291
ORF length:
222
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gttaacacag agcctggagg aggtggttcg cagtgggcag cagcagagtg
121accaaatcca aaaacttaga gttgaacttg aatgcctgaa tcaggaacat cagagcctgc
181agctgccatg gtcagagctg acccagaccc ttgaggaaag tcaagaccag gtgggtgtga
241gcgatggctg gaggcactgg gtccagtccc acctgggagc agcatcaccg ttgccaactt
301tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
361agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)