Construct: ORF ccsbBroad304_13894
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009857.1_s304c1, BRDN0000462424
- Derived from:
- ccsbBroadEn_13894
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- LTBP1 (4052)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13894
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4052 | LTBP1 | latent transforming growth ... | NM_000627.3 | 99.9% | 46.6% | 1949_1950insG;3787G>T |
| 2 | human | 4052 | LTBP1 | latent transforming growth ... | NM_001166264.1 | 96.9% | 48.1% | 1949_1950insG;2751_2752ins126;3661G>T |
| 3 | human | 4052 | LTBP1 | latent transforming growth ... | NM_001166265.1 | 96.1% | 42.8% | 1186_1187ins159;1790_1791insG;3628G>T |
| 4 | human | 4052 | LTBP1 | latent transforming growth ... | XM_024452890.1 | 93.9% | 45% | (many diffs) |
| 5 | human | 4052 | LTBP1 | latent transforming growth ... | NM_001166266.1 | 93.1% | 44.1% | (many diffs) |
| 6 | human | 4052 | LTBP1 | latent transforming growth ... | XM_024452888.1 | 90.7% | 41.2% | (many diffs) |
| 7 | human | 4052 | LTBP1 | latent transforming growth ... | XM_024452889.1 | 90.7% | 41.2% | (many diffs) |
| 8 | human | 4052 | LTBP1 | latent transforming growth ... | XM_011532860.2 | 82.2% | 35.1% | (many diffs) |
| 9 | human | 4052 | LTBP1 | latent transforming growth ... | NM_206943.3 | 80.3% | 36.6% | (many diffs) |
| 10 | human | 4052 | LTBP1 | latent transforming growth ... | XM_011532853.2 | 80.3% | 36.5% | (many diffs) |
| 11 | human | 4052 | LTBP1 | latent transforming growth ... | XM_011532855.2 | 80.3% | 36.5% | (many diffs) |
| 12 | human | 4052 | LTBP1 | latent transforming growth ... | XM_017004108.1 | 78% | 37.4% | (many diffs) |
| 13 | human | 4052 | LTBP1 | latent transforming growth ... | XM_011532856.2 | 77.9% | 37.3% | (many diffs) |
| 14 | human | 4052 | LTBP1 | latent transforming growth ... | XM_017004109.1 | 77.9% | 37.5% | (many diffs) |
| 15 | human | 4052 | LTBP1 | latent transforming growth ... | XM_011532857.2 | 77.8% | 37.4% | (many diffs) |
| 16 | human | 4052 | LTBP1 | latent transforming growth ... | XM_011532858.2 | 77.8% | 34.1% | (many diffs) |
| 17 | human | 4052 | LTBP1 | latent transforming growth ... | XM_005264317.3 | 77.2% | 33.5% | (many diffs) |
| 18 | human | 4052 | LTBP1 | latent transforming growth ... | XM_011532859.2 | 77.2% | 33.4% | (many diffs) |
| 19 | human | 4052 | LTBP1 | latent transforming growth ... | XM_017004110.1 | 75.6% | 38.4% | (many diffs) |
| 20 | human | 4052 | LTBP1 | latent transforming growth ... | XM_011532861.2 | 75.1% | 38.5% | (many diffs) |
| 21 | human | 4052 | LTBP1 | latent transforming growth ... | XM_005264318.3 | 74.8% | 34.3% | (many diffs) |
| 22 | human | 4052 | LTBP1 | latent transforming growth ... | XM_011532862.2 | 52.8% | 50.3% | (many diffs) |
| 23 | mouse | 268977 | Ltbp1 | latent transforming growth ... | NM_206958.3 | 87.8% | 43.2% | (many diffs) |
| 24 | mouse | 268977 | Ltbp1 | latent transforming growth ... | NM_001331233.1 | 87.7% | 43.2% | (many diffs) |
| 25 | mouse | 268977 | Ltbp1 | latent transforming growth ... | XM_006524353.2 | 87% | 42.3% | (many diffs) |
| 26 | mouse | 268977 | Ltbp1 | latent transforming growth ... | NM_001331234.1 | 85% | 44.6% | (many diffs) |
| 27 | mouse | 268977 | Ltbp1 | latent transforming growth ... | NM_001331237.1 | 84.1% | 39.8% | (many diffs) |
| 28 | mouse | 268977 | Ltbp1 | latent transforming growth ... | NM_001331235.1 | 84% | 39.8% | (many diffs) |
| 29 | mouse | 268977 | Ltbp1 | latent transforming growth ... | NM_001331236.1 | 81.3% | 41% | (many diffs) |
| 30 | mouse | 268977 | Ltbp1 | latent transforming growth ... | XM_006524351.2 | 72.5% | 32.2% | (many diffs) |
| 31 | mouse | 268977 | Ltbp1 | latent transforming growth ... | NM_019919.4 | 71% | 34.5% | (many diffs) |
| 32 | mouse | 268977 | Ltbp1 | latent transforming growth ... | XM_006524348.3 | 70.9% | 34.5% | (many diffs) |
| 33 | mouse | 268977 | Ltbp1 | latent transforming growth ... | XM_006524349.3 | 68.7% | 35.4% | (many diffs) |
| 34 | mouse | 268977 | Ltbp1 | latent transforming growth ... | XM_006524350.3 | 68% | 31.7% | (many diffs) |
| 35 | mouse | 268977 | Ltbp1 | latent transforming growth ... | XM_017317492.1 | 67.9% | 31.7% | (many diffs) |
| 36 | mouse | 268977 | Ltbp1 | latent transforming growth ... | XM_017317493.1 | 65.7% | 32.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2034
- ORF length:
- 1965
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggatactaag ctgatgtgtt tgttgttctt tttctccctg cctccgctcc 121 tagtgagtaa ccacactggc cgcatcaagg tggtctttac tccgagcatc tgtaaagtga 181 cctgcaccaa gggcagctgt cagaacagct gtgagaaggg gaacaccacc actctcatta 241 gtgagaatgg tcatgctgcc gacaccctga cggccacgaa cttccgagtg gtaatttgcc 301 atcttccatg tatgaatggt ggccagtgca gttcaaggga caaatgtcag tgccctccaa 361 atttcacagg aaaactttgt cagatcccag tccatggtgc cagcgtgcct aaactttatc 421 agcattccca gcagccaggc aaggcgttgg ggacgcatgt catccattca acacatacct 481 tgcctctgac cgtgactagc cagcaaggag tcaaagtgaa atttcctcct aacatagtca 541 atatccatgt gaaacatcct cctgaagctt ccgtccagat acatcaggtt tcaagaattg 601 atggcccaac aggccagaag acaaaagaag ctcaaccagg ccaatcccaa gtctcgtacc 661 aagggcttcc tgtccagaag acccagacca tacattccac atactcccac cagcaggtca 721 ttcctcacgt ctaccccgtg gctgctaaga cacagcttgg ccggtgcttc caggaaacca 781 ttgggtcaca gtgtggcaaa gcgctccctg gcctttcaaa gcaagaggac tgctgtggaa 841 ctgtgggtac ctcctggggc tttaacaaat gccagaaatg ccccaagaaa ccatcttatc 901 atggatacaa ccaaatgatg gaatgcctac cgggttataa gcgggttaac aacacctttt 961 gccaagatat taatgaatgt cagctacaag gtgtatgccc taatggtgag tgtttgaata 1021 ccatgggcag ctatcgatgt acctgcaaaa taggatttgg gccggatcct accttttcaa 1081 gttgtgttcc tgatccccct gtgatctcgg aagagaaagg gccctgttac cgacttgtca 1141 gttctggaag acagtgtatg caccctctgt ctgttcacct caccaagcag ctctgctgtt 1201 gtagtgtggg caaggcctgg ggcccacact gtgagaaatg tccccttcca ggcacagctg 1261 cttttaagga aatctgtcct ggtggaatgg gttatacggt ttctggcgtt catagacgca 1321 ggccaatcca tcaccatgta ggtaaaggac ctgtatttgt caagccaaag aacactcaac 1381 ctgttgctaa aagtactcat cctccacctc tcccagccaa ggaagagcca gtggaggccc 1441 tgaccttctc ccgggaacac gggccaggag tggcggagcc agaagtggca actgcacccc 1501 ctgaaaagga aataccttca ttggatcaag agaaaaccaa acttgagcct ggtcaacccc 1561 agctgtctcc aggcatttcc actattcatc tgcatccaca gtttccagta gtgattgaaa 1621 aaacatcacc tcctgtgcct gttgaagtag ctcctgaagc ttctacgtct agtgccagcc 1681 aagtgattgc tcctactcaa gtgacagaaa tcaatgaatg tactgtgaac cctgatatct 1741 gtggagcagg acactgcatt aacctaccag tgagatatac ctgtatatgc tacgagggct 1801 acaggttcag tgaacaacag aggaaatgtg tggatattga tgagtgtact caggtccaac 1861 acctctgctc ccagggccgc tgtgaaaaca ccgagggaag tttcttgtgc atttgcccag 1921 caggatttat ggccagtgag gagggtacta actgcataga tgttgacgaa tgcctgaggc 1981 cggacgtctg tggggagggg cactgtgtca atactgtggg gggccttccg gtgtgaatac 2041 tgtgacagcg ggtaccgcat gactcagaga ggccgttgtg aggatattga tgaatgtttg 2101 aatccaagca cttgtccaga tgagcagtgt gtgaattctc ctggatctta ccagtgcgtt 2161 ccctgcacag aaggattccg aggctggaat ggacagtgcc ttgatgtgga cgagtgcctg 2221 gaaccaaacg tctgcgcaaa tggtgattgt tccaaccttg aaggctccta catgtgttca 2281 tgccacaaag gctatacccg gactccggac cacaagcact gtagagatat tgatgaatgt 2341 cagcaaggga atctatgtgt aaacgggcag tgcaaaaata ccgagggctc cttcaggtgc 2401 acctgtggac aggggtacca gctgtcggca gctaaagacc agtgtgaaga cattgatgaa 2461 tgccagcacc gtcatctctg tgctcatggg cagtgcagga acactgaggg ctcttttcaa 2521 tgtgtgtgtg accagggtta cagagcatct gggcttggag accactgtga agatatcaat 2581 gaatgcttgg aggacaagag tgtttgccag agaggagact gcattaatac tgcagggtcc 2641 tatgattgta cttgtccgga tggatttcag ctagatgaca ataaaacatg tcaagatatt 2701 aatgaatgtg aacatccagg gctctgtggt ccgcaagggg agtgcctaaa cacagagggt 2761 tctttccatt gtgtctgcca gcagggtttc tcaatctctg cagatggccg tacgtgtgaa 2821 gatattgatg aatgtgtaaa caacactgtt tgtgacagtc acgggttttg tgacaataca 2881 gctggctcct tccgctgcct ctgttatcag ggctttcaag ccccacagga tgggcaaggg 2941 tgtgtggatg tgaatgaatg tgaactgctc agtggggtgt gtggtgaagc cttctgtgaa 3001 aacgtggaag ggtccttcct gtgcgtgtgt gctgatgaaa accaagagta cagccccatg 3061 actgggcagt gccgctcccg gacctccaca gatttagatg tagatgtaga tcaacccaaa 3121 gaagaaaaga aagaatgcta ctataatctc aatgacgcca gtctctgtga taatgtgttg 3181 gcccccaatg tcacgaaaca agaatgctgc tgtacatcag gcgcgggatg gggagataac 3241 tgcgaaatct tcccctgccc ggtcttggga actgctgagt tcactgaaat gtgtcccaaa 3301 gggaaaggtt ttgtgcctgc tggagaatca tcttctgaag ctggtggtga gaactataaa 3361 gatgcagatg aatgcctact ttttggacaa gaaatctgca aaaatggttt ctgtttgaac 3421 actcggcctg ggtatgaatg ctactgtaag caagggacgt actatgatcc tgtgaaactg 3481 cagtgctttg atatggatga atgtcaagac cccagtagtt gtattgatgg ccagtgtgtt 3541 aatacagagg gctcttacaa ctgcttctgt actcacccca tggtcctgga tgcgtcagaa 3601 aaaagatgta tacgaccggc tgagtcaaac gaacaaatag aagaaactga tgtctaccaa 3661 gatttgtgct gggaacatct gagtgatgaa tacgtgtgta gccggcctct tgtgggcaag 3721 cagacaacgt acactgagtg ctgctgtctg tatggagagg cctggggcat gcagtgtgcc 3781 ctctgccccc tgaaggattc agatgactat gctcagctgt gtaacatccc cgtgacggga 3841 cgccggcagc catattgacg ggacgccttg gttgacttca gtgaacagta tactccagaa 3901 gccgatccct acttcatcca agaccgtttt ctaaatagct ttgaggagtt acaggctgag 3961 gaatgcggca tcctcaatgg atgtgaaaat ggtcgctgtg tgagggtcca ggaaggttac 4021 acctgcgatt gctttgatgg gtatcacttg gatacggcca agatgacctg tgtcgatgta 4081 aatgaatgcg atgagttgaa caaccggatg tctctctgca agaatgccaa gtgcattaac 4141 accgatggtt cctacaagtg tttgtgtctg ccaggctacg tgccttctga caagccaaac 4201 tactgcactc cgttgaatac cgccttgaat ttagagaaag acagtgacct ggagttgcca 4261 actttcttgt acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct 4321 acgtagtaat gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt 4381 a