Construct: ORF ccsbBroad304_14026
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017796.1_s304c1, BRDN0000403773
- Derived from:
- ccsbBroadEn_14026
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZFYVE16 (9765)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_14026
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XR_001742384.1 | 84.4% | (many diffs) | |
| 2 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | NM_001105251.4 | 78% | 77.8% | (many diffs) |
| 3 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | NM_001284236.3 | 78% | 77.8% | (many diffs) |
| 4 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | NM_001349434.2 | 78% | 77.8% | (many diffs) |
| 5 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | NM_014733.6 | 78% | 77.8% | (many diffs) |
| 6 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XM_005248632.4 | 78% | 77.8% | (many diffs) |
| 7 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XM_017010091.1 | 78% | 77.8% | (many diffs) |
| 8 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XM_017010092.2 | 78% | 77.8% | (many diffs) |
| 9 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XM_024446270.1 | 78% | 77.8% | (many diffs) |
| 10 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XR_001742381.1 | 72.5% | (many diffs) | |
| 11 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | NM_001284237.2 | 66.9% | 66.6% | (many diffs) |
| 12 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XR_001742373.1 | 56.3% | (many diffs) | |
| 13 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XR_001742379.2 | 55.9% | (many diffs) | |
| 14 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XR_001742382.2 | 55.6% | (many diffs) | |
| 15 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XR_001742375.1 | 54.2% | (many diffs) | |
| 16 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XR_001742380.2 | 53.8% | (many diffs) | |
| 17 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XR_001742376.2 | 49.1% | (many diffs) | |
| 18 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XR_001742378.2 | 48.8% | (many diffs) | |
| 19 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XR_001742377.2 | 47.7% | (many diffs) | |
| 20 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XR_002956199.1 | 38.5% | (many diffs) | |
| 21 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | NR_146173.2 | 33.1% | (many diffs) | |
| 22 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | NR_146174.2 | 32.6% | (many diffs) | |
| 23 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | NR_146172.2 | 32.5% | (many diffs) | |
| 24 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XM_024446271.1 | 25.3% | 25.2% | (many diffs) |
| 25 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XM_024446272.1 | 25.3% | 25.2% | (many diffs) |
| 26 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XM_024446273.1 | 25.3% | 25.2% | (many diffs) |
| 27 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XM_017010096.1 | 19.2% | 19.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3681
- ORF length:
- 3615
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga cagttatttt aaagcagctg tcagtgactt ggacaaactc cttgatgatt 121 ttgaacagaa cccagatgaa caagattatc tccaagatgt acaaaatgca tatgattcta 181 accactgctc agtttcttca gagttggctt cctcacagcg aacttcattg ctcccaaaag 241 accaagagtg cgttaatagt tgtgcctcat cagaaacaag ctatggaaca aatgagagtt 301 ccctgaatga aaaaacactc aagggactta cttctataca aaatgaaaaa aatgtaacag 361 gacttgatct tctttcttct gtggatggtg gtacttcaga tgaaatccag ccgttatata 421 tgggacgatg tagtaaacct atctgtgatc tgataagtga catgggtaac ttagttcatg 481 caaccaatag tgaagaagat attaaaaaat tattgccaga tgattttaag tctaatgcag 541 attccttgat tggattggat ttatcttcag tgtcagatac tccctgtgtt tcttcaacag 601 accatgatag tgatactgtc agagaacaac agaatgatac cagttctgaa ttacaaaata 661 gagaaatcgg aggaatcaaa gaattgggta taaaagtaga tacaacactt tcagattcct 721 ataattacag tggaacagaa aatttaaaag ataaaaagat ctttaatcag ttagaatcaa 781 ttgttgattt taacatgtca tctgctttga ctcgacaaag ttccaaaatg tttcatgcca 841 aagacaagct acaacacaag agccagccat gtggattact aaaagatgtt ggcttagtaa 901 aagaggaagt agatgtggca gtcataactg ccgcagaatg tttaaaagaa gagggcaaga 961 caagtgcttt gacctgcagc cttccgaaaa atgaagattt atgcttaaat gattcaaatt 1021 caagagatga aaatttcaaa ttacctgact tttcctttca ggaagataag actgttataa 1081 aacaatctgc acaagaagac tcaaaaagtt tagaccttaa ggataatgat gtaatccaag 1141 attcctcttc agctttacat gtttccggta aagatgtgcc gtcctcattg tcctgtcttc 1201 ctgcgtctgg gtctatgtgt ggatcattaa ttgaaagtaa agcacggggt gattttttac 1261 ctcagcatga acataaagat aatatacaag atgcagtgac tatacatgaa gaaatacaga 1321 acagtgttgt tctaggtggg gaaccattca aagagaatga tcttttgaaa caggaaaaat 1381 gtaaaagcat actccttcag tcattaattg aagggatgga agacagaaag atagatcctg 1441 accagacagt aatcagagct gagtctttgg atggtggtga caccagttct acagttgtag 1501 aatctcaaga ggggctttct ggcactcatg tcccagagtc ttctgattgt tgtgaaggtt 1561 ttattaatac tttttcaagc aatgatatgg atgggcaaga cttagattac tttaatattg 1621 atgaaggcgc aaaaagtggc ccactaatta gtgatgctga acttgatgcc tttctgacag 1681 aacagtatct tcagaccact aacataaagt cttttgaaga aaatgtaaat gactctaaat 1741 cgcaaatgaa tcagatagat atgaaaggct tagatgatgg aaacatcaat aatatatatt 1801 tcaatgcaga agcaggagct attggggaaa gtcatggtat taatataatt tgtgaaacag 1861 ttgataaaca aaatacaata gaaaatggcc tttctttagg agaaaaaagc actattccag 1921 ttcaacaagg gttacctacc agtaagtctg agattacaaa tcaattatca gtctctgata 1981 ttaacagtca atctgttgga ggggccagac ctaagcaatt gtttagcctt ccatcaagaa 2041 caaggagttc aaaggacctg aataagccag atgttccaga tacaatagaa agtgaaccca 2101 gcacagcaga taccgttgtt ccaatcactt gtgctataga ttctacagct gatccacagg 2161 ttagcttcaa ctctaattac attgatatag aaagtaattc tgaaggtgga tctagtttcg 2221 taactgcaaa tgaagattct gtacctgaaa acacttgcaa agaaggcttg gttttgggcc 2281 agaaacagcc tacttgggtt cctgattcag aagctccaaa ctgtatgaac tgccaagtca 2341 aatttacttt taccaaacgg cgacaccatt gccgagcatg tgggaaagta ttttgtggtg 2401 tctgttgtaa taggaagtgt aaactgcaat atctagaaaa ggaagcaaga gtatgtgtag 2461 tctgctatga aactattagt aaagctcagg catttgaaag gatgatgagt ccaactggtt 2521 ctaatcttaa gtctaatcat tctgatgaat gtactactgt ccagcctcct caggagaacc 2581 aaacatccag tataccttca ccagcaactt tgccagtctc agcacttaaa caaccaggtg 2641 ttgaaggact atgttccaaa gaacagaaga gagtatggtt tgcagatggt atattgccca 2701 atggtgaagt tgcagataca acaaaattat catctggaag taaaagatgt tctgaagact 2761 ttagtcctct ctcacctgat gtgcctatga cagtaaacac agtggatcat tcccattcta 2821 ctacagtgga aaagccaaac aatgagacag gagatattac aagaaatgag ataattcaga 2881 gtcctatttc tcaggttcca tcagtggaaa aattgtctat gaacacagga aatgaggggt 2941 tacctacttc tggttcattt acactagatg atgatgtttt tgcagaaact gaagaaccat 3001 ctagtcctac tggtgtctta gttaacagca atttacctat tgctagtatt tcagattata 3061 ggttactgtg tgatattaac aagtatgtct gcaataagat tagtcttcta cctaatgatg 3121 aggacagttt gcccccactt ctggttgcat ctggagaaaa gggatcagtg cctgtagtag 3181 aagaacatcc atctcatgag cagatcattt tgcttcttga aggtgaaggc tttcatcctg 3241 ttacatttgt cctaaatgct aatctactcg tgaatgtcaa attcatattt tattcctcag 3301 acaaatattg gtacttttca accaatggat tgcatggctt gggacaggca gaaattatta 3361 ttctattgtt atgtttgcca aatgaagata ctattcctaa ggacatcttc agactattta 3421 tcaccatata taaggatgct ctaaaaggaa aatacataga aaacttggac aatattacct 3481 ttactgagag ttttctcagt agcaaggatc acggaggatt cctgtttatt acacctactt 3541 ttcagaaact tgatgatctc tcattaccaa gtaatccttt tctttgtgga attcttatcc 3601 agaagcttga gattccctgg gcaaaggttt ttcctatgcg tttaatgttg agattgggtg 3661 cagaatataa aagtaagttt tacccaactt tcttgtacaa agtggttggt aagcctatcc 3721 ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg 3781 ttaagtcgac aatcaacctc tggatta