Construct: ORF ccsbBroad304_14102
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011124.1_s304c1, BRDN0000409501
- Derived from:
- ccsbBroadEn_14102
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZZZ3 (26009)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_14102
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26009 | ZZZ3 | zinc finger ZZ-type contain... | NM_001308237.1 | 99.6% | 99% | (many diffs) |
| 2 | human | 26009 | ZZZ3 | zinc finger ZZ-type contain... | XM_005270729.4 | 99.6% | 99% | (many diffs) |
| 3 | human | 26009 | ZZZ3 | zinc finger ZZ-type contain... | XM_024446298.1 | 99.6% | 99% | (many diffs) |
| 4 | human | 26009 | ZZZ3 | zinc finger ZZ-type contain... | XM_017000972.1 | 99.4% | 98.7% | (many diffs) |
| 5 | human | 26009 | ZZZ3 | zinc finger ZZ-type contain... | NM_015534.6 | 45% | 43.9% | (many diffs) |
| 6 | human | 26009 | ZZZ3 | zinc finger ZZ-type contain... | XM_005270725.3 | 45% | 43.9% | (many diffs) |
| 7 | human | 26009 | ZZZ3 | zinc finger ZZ-type contain... | XM_005270726.3 | 45% | 43.9% | (many diffs) |
| 8 | human | 26009 | ZZZ3 | zinc finger ZZ-type contain... | XM_005270727.4 | 44.9% | 43.8% | (many diffs) |
| 9 | human | 26009 | ZZZ3 | zinc finger ZZ-type contain... | XM_017000970.2 | 44.9% | 43.8% | (many diffs) |
| 10 | human | 26009 | ZZZ3 | zinc finger ZZ-type contain... | XR_001737104.1 | 16.5% | (many diffs) | |
| 11 | human | 26009 | ZZZ3 | zinc finger ZZ-type contain... | XR_001737103.1 | 14.6% | (many diffs) | |
| 12 | mouse | 108946 | Zzz3 | zinc finger, ZZ domain cont... | NM_001346655.1 | 88.7% | 93.8% | (many diffs) |
| 13 | mouse | 108946 | Zzz3 | zinc finger, ZZ domain cont... | XM_006500857.3 | 88.7% | 93.8% | (many diffs) |
| 14 | mouse | 108946 | Zzz3 | zinc finger, ZZ domain cont... | XM_006500855.3 | 86.5% | 91% | (many diffs) |
| 15 | mouse | 108946 | Zzz3 | zinc finger, ZZ domain cont... | XM_006500856.3 | 86.3% | 90.8% | (many diffs) |
| 16 | mouse | 108946 | Zzz3 | zinc finger, ZZ domain cont... | NM_001080755.2 | 39.9% | 41.3% | (many diffs) |
| 17 | mouse | 108946 | Zzz3 | zinc finger, ZZ domain cont... | XM_006500848.3 | 39.9% | 41.3% | (many diffs) |
| 18 | mouse | 108946 | Zzz3 | zinc finger, ZZ domain cont... | XM_006500850.3 | 39.9% | 41.3% | (many diffs) |
| 19 | mouse | 108946 | Zzz3 | zinc finger, ZZ domain cont... | XM_006500851.3 | 39.9% | 41.3% | (many diffs) |
| 20 | mouse | 108946 | Zzz3 | zinc finger, ZZ domain cont... | XM_017319423.1 | 39.9% | 41.3% | (many diffs) |
| 21 | mouse | 108946 | Zzz3 | zinc finger, ZZ domain cont... | NM_001287139.1 | 39.7% | 41.2% | (many diffs) |
| 22 | mouse | 108946 | Zzz3 | zinc finger, ZZ domain cont... | XM_006500852.3 | 39.7% | 41.2% | (many diffs) |
| 23 | mouse | 108946 | Zzz3 | zinc finger, ZZ domain cont... | XM_011239984.2 | 17.7% | 17.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1293
- ORF length:
- 1227
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgat agatctttgg ttgtactgtt atcagagact attacagacg attgctgtac 121 tcgaggctca gcgttctcaa gcagtccaag accttgaaag tttaggcagg caccagagag 181 aagcactgaa aaatcccatt ggatttgtgg aaaaactcca gaagaaggct gatattgggc 241 ttccatatcc acagagagtt gttcaattgc ctgagatcgt atgggaccaa tatacccata 301 gccttgggaa ttttgaaaga gaatttaaaa atcgtaaaag acatactaga agagttaagc 361 tagtttttgg taaagtaggt ttacctgcta gaccaaaaag tcctttagat cctaagaagg 421 atggagagtc cctttcatat tctatgttgc ctttgagtga tggtccagaa ggctcaagca 481 gtcgtcctca gatgataaga ggacgcttgt gtgatgatac caaacctgaa acatttaacc 541 agttgtggac tgttgaagaa cagaaaaagc tggaacagct actcatcaaa taccctcctg 601 aagaagtaga atctcgacgc tggcagaaga tagcagatga attgggcaac aggacagcaa 661 aacaggttgc cagccaagta cagaagtatt tcataaagct aactaaagct ggcattccag 721 taccaggcag aacaccaaac ttatgtatat actccaaaaa gtcttcaaca agcagacgac 781 agcaccctct taataagcat ctctttaagc cttccacttt catgacttca catgaaccgc 841 cagtgtatat ggatgaagat gatgaccgat cttgttttca tagccacatg aacactgctg 901 ttgaagatgc atcagatgac gaaagtattc ctatcatgta taggaattta cctgaatata 961 aagaactatt acagtttaaa aagttaaaga agcagaaact tcagcaaatg caagctgaaa 1021 gtggatttgt gcaacatgtg ggctttaagt gtgataactg tggcatagaa cccatccagg 1081 gtgttcggtg gcattgccag gattgtcctc cagaaatgtc tttggatttc tgtgattctt 1141 gttcagactg tctacatgaa acagatattc acaaggaaga tcaccaatta gaacctattt 1201 ataggtcaga gacattctta gacagagact actgtgtgtc tcagggcacc agttacaatt 1261 accttgaccc aaactacttt ccagcaaaca gatgcccaac tttcttgtac aaagtggttg 1321 gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta 1381 accggtggcg cgttaagtcg acaatcaacc tctggatta