Construct: ORF ccsbBroad304_14144

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006826.1_s304c1, BRDN0000461730
Derived from:
ccsbBroadEn_14144
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
CRIM1 (51232)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14144
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51232 CRIM1 cysteine rich transmembrane... NM_016441.3 99.7% 40.1% (many diffs)
2 human 51232 CRIM1 cysteine rich transmembrane... XM_011532898.3 95.9% 38.6% (many diffs)
3 human 51232 CRIM1 cysteine rich transmembrane... XM_005264357.5 94.1% 34.5% (many diffs)
4 human 51232 CRIM1 cysteine rich transmembrane... XM_017004259.1 93.5% 42.8% (many diffs)
5 human 51232 CRIM1 cysteine rich transmembrane... XM_017004260.2 91.9% 32.3% (many diffs)
6 human 51232 CRIM1 cysteine rich transmembrane... XM_011532899.3 89.9% 41% (many diffs)
7 human 51232 CRIM1 cysteine rich transmembrane... XM_011532901.3 89.1% 41.4% (many diffs)
8 human 51232 CRIM1 cysteine rich transmembrane... XM_017004258.2 88.4% 31.1% (many diffs)
9 human 51232 CRIM1 cysteine rich transmembrane... XM_024452945.1 84.5% 24.9% (many diffs)
10 human 51232 CRIM1 cysteine rich transmembrane... XM_024452946.1 84.5% 24.9% (many diffs)
11 human 51232 CRIM1 cysteine rich transmembrane... XM_024452947.1 84.5% 24.9% (many diffs)
12 human 51232 CRIM1 cysteine rich transmembrane... XM_024452948.1 84.5% 24.9% (many diffs)
13 human 51232 CRIM1 cysteine rich transmembrane... XM_017004261.1 68.7% 8.4% (many diffs)
14 human 51232 CRIM1 cysteine rich transmembrane... XM_017004262.1 68.7% 8.4% (many diffs)
15 human 51232 CRIM1 cysteine rich transmembrane... XR_001738763.2 52.8% (many diffs)
16 mouse 50766 Crim1 cysteine rich transmembrane... NM_015800.3 87.5% 36.4% (many diffs)
17 mouse 50766 Crim1 cysteine rich transmembrane... XM_006524601.3 80.4% 29% (many diffs)
18 mouse 50766 Crim1 cysteine rich transmembrane... XM_006524602.3 73.5% 21.9% (many diffs)
19 mouse 50766 Crim1 cysteine rich transmembrane... XM_006524603.3 62.5% 8.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1407
ORF length:
1338
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gtacttggtg gcgggggaca gggggttggc cggctgcggg cacctcctgg
121tctcgctgct ggggctgctg ctgctgctgg cgcgctccgg cacccgggcg ctggtctgcc
181tgccctgtga cgagtccaag tgcgaggagc ccaggaactg cccggggagc atcgtgcagg
241gcgtctgcgg ctgctgctac acgtgcgcca gccagaggaa cgagagctgc ggcggcacct
301tcgggattta cggaacctgc gaccgggggc tgcgttgtgt catccgcccc ccgctcaatg
361gcgactccct caccgagtac gaagcgggcg tttgcgaaga tgagaactgg actgatgacc
421aactgcttgg ttttaaacca tgcaatgaaa accttattgc tggctgcaat ataatcaatg
481ggaaatgtga atgtaacacc attcgaacct gcagcaatcc ctttgagttt ccaagtcagg
541atatgtgcct ttcagcttta aagagaattg aagaagagaa gccagattgc tccaaggccc
601gctgtgaagt ccagttctct ccacgttgtc ctgaagattc tgttctgatc gagggttatg
661ctcctcctgg ggagtgctgt cccttaccca gccgctgcgt gtgcaacccc gcaggctgtc
721tgcgcaaagt ctgccagccg ggaaacctga acatactagt gtcaaaagcc tcagggaagc
781cgggagagtg ctgtgacctc tatgagtgca aaccagtttt cggcgtggac tgcaggactg
841tggaatgccc tcctgttcag cagaccgcgt gtcccccgga cagctatgaa actcaagtca
901gactaactgc agatggttgc tgtactttgc caacaagatg cgagtgtctc tctggcttat
961gtggtttccc cgtgtgtgag gtgggatcca ctccccgcat agtctctcgt ggcgatggga
1021cacctggaaa gtgctgtgat gtctttgaat gtgttaatga tacaaagcca gcctgcgtat
1081ttaacaatgt ggaatattat gatggagaca tgtttcgaat ggacaactgt cggttctgtc
1141gatgccaagg gggcgttgcc atctgcttca ctgcccagtg tggtgagata aactgcgaga
1201ggtactacgt gcccgaagga gagtgctgcc cagtgtgtga agatccagtg tatcctttta
1261ataatcccgc tggctgctat gccaatggcc tgatccttgg ccacacngag acnggtggcg
1321ggnagacgac tgcacattct gccagtgcgt caacggtgaa cgccactgcg ttgcgaccgt
1381ctgcggacag acctgcacaa accctgtgaa agtgcctggg gagtgttgcc ctgtgtgcga
1441agaaccaacc atcatcacag ttgatccacc tgcatgtggg gagttatcaa actgcactct
1501gacagggaag gactgcatta atggtttcaa acgcgatcac aatggttgtc ggacctgtca
1561gtgcataaac accgaggaac tatgttcaga acgtaaacaa ggctgcacct tgaactgtcc
1621cttcggtttc cttactgatg cccaaaactg tgagatctgt gagtgccgcc caaggcccaa
1681gaagtgcaga cccataatct gtgacaagta ttgtccactt ggattgctga agaataagca
1741cggctgtgac atctgtcgct gtaagaaatg tccagagctc tcatgcagta agatctgccc
1801cttgggtttc cagcaggaca gtcacggctg tcttatctgc aagtgcagag aggcctctgc
1861ttcagctggg ccacccatcc tgtcgggcac ttgtctcacc gtggatggtc atcatcataa
1921aaatgaggag agctggcacg atgggtgccg ggaatgctac tgtctcaatg gacgggaaat
1981gtgtgccctg atcacctgcc cggtgcctgc ctgtggcaac cccaccattc accctggaca
2041gtgctgccca tcatgtgcag atgactttgt ggtgcagaag ccagagctca gtactccctc
2101catttgccac gcccctggag gagaatactt tgtggaagga gaaacgtgga acattgactc
2161ctgtactcag tgcacctgcc acagcggacg ggtgctgtgt gagacagagg tgtgcccacc
2221gctgctctgc cagaacccct cacgcaccca ggattcctgc tgcccacagt gtacagatca
2281accttttcgg ccttccttgt cccgcaataa cagcgtacct aattactgca aaaatgatga
2341aggggatata ttcctggcag ctgagtcctg gaagcctgac gtttgtacca gctgcatctg
2401cattgatagc gtaattagct gtttctctga gtcctgccct tctgtatcct gtgaaagacc
2461tgtcttgaga aaaggccagt gttgtcccta ctgcatagaa gacacaattc caaagaaggt
2521ggtgtgccac ttcagtggga aggcctatgc cgacgaggag cggtgggacc ttgacagctg
2581cacccactgc tactgcctgc agggccagac cctctgctcg accgtcagct gcccccctct
2641gccctgtgtt gagcccatca acgtggaagg aagttgctgc ccaatgtgtc cagaaatgta
2701tgtcccagaa ccaaccaata tacccattga gaagacaaac catcgaggag aggttgacct
2761ggaggttccc ctgtggccca cgcctagtga aaatgatatc gtccatctcc ctagagatat
2821gggtcacctc caggtagatt acagagataa caggctgcac ccaagtgaag attcttcact
2881ggactccatt gcctcagttg tggttcccat aattatatgc ctctctatta taatagcatt
2941cctattcatc aatcagaaga aacagtggat accactgctt tgctggtatc gaacaccaac
3001taagccttct tccttaaata atcagctagt atctgtggac tgcaagaaag gaaccagagt
3061ccaggtggac agttcccaga gaatgctaag aattgcagaa ccagatgcaa gattcagtgg
3121cttctacagc atgcaaaaac agaaccatct acaggcagac aatttctacc aaacagtgtt
3181gccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc tcggtctcga
3241ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg
3301gatta

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