Transcript: Mouse NM_015800.3

Mus musculus cysteine rich transmembrane BMP regulator 1 (chordin like) (Crim1), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Crim1 (50766)
Length:
5995
CDS:
522..3635

Additional Resources:

NCBI RefSeq record:
NM_015800.3
NBCI Gene record:
Crim1 (50766)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_015800.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000251702 AGGAGAAGGACTGCGTTTATG pLKO_005 1954 CDS 100% 13.200 18.480 N Crim1 n/a
2 TRCN0000265203 GTGCGTGGATAGCGCAATTAG pLKO_005 2849 CDS 100% 13.200 18.480 N Crim1 n/a
3 TRCN0000173204 CCATCATCATAAGAACGAGGA pLKO.1 2360 CDS 100% 2.160 3.024 N Crim1 n/a
4 TRCN0000251699 GGTAGATTACAGAGATAATAA pLKO_005 3284 CDS 100% 15.000 12.000 N Crim1 n/a
5 TRCN0000176346 CAAGCCTTCTTCCTTGAATAA pLKO.1 3455 CDS 100% 13.200 9.240 N Crim1 n/a
6 TRCN0000175393 CCAGGTAGATTACAGAGATAA pLKO.1 3281 CDS 100% 13.200 9.240 N Crim1 n/a
7 TRCN0000251700 TAATATGCCTGTCCATCATAA pLKO_005 3367 CDS 100% 13.200 9.240 N Crim1 n/a
8 TRCN0000251701 TCATCTCCGGCTGCAACATAA pLKO_005 907 CDS 100% 13.200 9.240 N Crim1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_015800.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14144 pDONR223 100% 87.5% 36.4% None (many diffs) n/a
2 ccsbBroad304_14144 pLX_304 0% 87.5% 36.4% V5 (not translated due to prior stop codon) (many diffs) n/a
3 TRCN0000480541 ACATAGGCCCAGCACTACTATAAC pLX_317 13.5% 87.5% 36.4% V5 (not translated due to prior stop codon) (many diffs) n/a
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