Construct: ORF ccsbBroad304_14197
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010935.1_s304c1, BRDN0000411571
- Derived from:
- ccsbBroadEn_14197
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF444 (55311)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_14197
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55311 | ZNF444 | zinc finger protein 444 | NM_001253792.2 | 100% | 100% | |
| 2 | human | 55311 | ZNF444 | zinc finger protein 444 | NM_018337.4 | 99.6% | 99.6% | 405_407delAGC |
| 3 | human | 55311 | ZNF444 | zinc finger protein 444 | XM_005259034.2 | 99.6% | 99.6% | 405_407delAGC |
| 4 | human | 55311 | ZNF444 | zinc finger protein 444 | XM_005259035.1 | 99.6% | 99.6% | 405_407delAGC |
| 5 | human | 55311 | ZNF444 | zinc finger protein 444 | XM_005259036.1 | 99.6% | 99.6% | 405_407delAGC |
| 6 | human | 55311 | ZNF444 | zinc finger protein 444 | XM_011527068.1 | 99.6% | 99.6% | 405_407delAGC |
| 7 | human | 55311 | ZNF444 | zinc finger protein 444 | XM_024451573.1 | 99.6% | 99.6% | 405_407delAGC |
| 8 | human | 55311 | ZNF444 | zinc finger protein 444 | XM_024451574.1 | 99.6% | 99.6% | 405_407delAGC |
| 9 | human | 55311 | ZNF444 | zinc finger protein 444 | XM_024451575.1 | 99.6% | 99.6% | 405_407delAGC |
| 10 | human | 55311 | ZNF444 | zinc finger protein 444 | XM_024451576.1 | 99.6% | 99.6% | 405_407delAGC |
| 11 | human | 55311 | ZNF444 | zinc finger protein 444 | XM_011527069.1 | 72.7% | 70.9% | (many diffs) |
| 12 | human | 55311 | ZNF444 | zinc finger protein 444 | XM_017026932.1 | 72.7% | 70.9% | (many diffs) |
| 13 | human | 55311 | ZNF444 | zinc finger protein 444 | XM_017026933.1 | 72.7% | 70.9% | (many diffs) |
| 14 | human | 55311 | ZNF444 | zinc finger protein 444 | XM_011527073.1 | 59.8% | 59.8% | 0_1ins393 |
| 15 | human | 55311 | ZNF444 | zinc finger protein 444 | XM_011527070.1 | 59.6% | 59.6% | 0_1ins393;12_14delAGC |
| 16 | human | 55311 | ZNF444 | zinc finger protein 444 | XM_011527071.1 | 59.6% | 59.6% | 0_1ins393;12_14delAGC |
| 17 | mouse | 72667 | Zfp444 | zinc finger protein 444 | NM_001146024.1 | 80% | 84.4% | (many diffs) |
| 18 | mouse | 72667 | Zfp444 | zinc finger protein 444 | NM_028316.3 | 80% | 84.4% | (many diffs) |
| 19 | mouse | 72667 | Zfp444 | zinc finger protein 444 | XM_006540380.3 | 80% | 84.4% | (many diffs) |
| 20 | mouse | 72667 | Zfp444 | zinc finger protein 444 | XM_006540381.3 | 80% | 84.4% | (many diffs) |
| 21 | mouse | 72667 | Zfp444 | zinc finger protein 444 | XM_006540382.2 | 80% | 84.4% | (many diffs) |
| 22 | mouse | 72667 | Zfp444 | zinc finger protein 444 | XM_006540383.3 | 80% | 84.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1044
- ORF length:
- 978
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga ggtggcggtg cccgtgaagc aggaggccga gggcctggcg ctggactccc 121 cgtggcaccg cttccgccgc ttccacctgg gcgacgcgcc gggcccgcgg gaggcgctgg 181 ggctgctccg cgccctgtgc cgggactggc tgcggcccga ggtgcacacc aaggagcaga 241 tgttggagct gctggtgctg gaacagttcc tgagcgcgct gcccgccgac acgcaggcct 301 gggtgtgcag ccggcagccg cagagcgggg aggaggcggt ggccctgctg gaggagctct 361 gggggccagc agcctccccc gatgggtcgt cagcaacgag ggtgcctcag gatgtgacgc 421 agggccctgg ggccacaggt ggaaaggagg acagtgggat gattccctta ggcaccgccc 481 ctggggctga ggggccggcg cctggggact cccaggctgt gcgcccctac aagcaggagc 541 ccagcagccc cccgctggcg cctggcctgc ccgccttcct agcggccccg ggcaccacgt 601 cctgccccga gtgcggcaaa acgtccctga aaccagctca cctgctgcgc caccggcaga 661 gccactcggg cgagaagccg cacgcctgcc ctgagtgcgg gaaggccttt cggcgcaagg 721 agcacctgcg gcgccaccgc gacacgcacc ccggcagccc cggcagcccc gggcccgcgc 781 tgcgccctct gcccgcccgt gagaagcccc acgcgtgctg cgagtgtggc aagaccttct 841 actggcgcga gcacctggtg cgccaccgca agacgcactc gggagcgcgg ccctttgcct 901 gctgggagtg tggcaagggc ttcgggcgcc gcgagcacgt gctgcgccac cagcgcatcc 961 acggccgggc agcggccagc gcgcaggggg cggtagctcc gggcccggat ggtggaggcc 1021 ccttcccgcc ctggcccttg ggttacccaa ctttcttgta caaagtggtt ggtaagccta 1081 tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc 1141 gcgttaagtc gacaatcaac ctctggatta