Construct: ORF ccsbBroad304_14262
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000308.1_s304c1, BRDN0000404655
- Derived from:
- ccsbBroadEn_14262
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- NAA16 (79612)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_14262
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | NM_001110798.2 | 99.8% | 99.3% | 771T>C;1275delT |
| 2 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XM_011535228.2 | 80.4% | 79.2% | (many diffs) |
| 3 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XM_017020745.2 | 79.4% | 72.1% | (many diffs) |
| 4 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XM_017020746.2 | 78.7% | 79.3% | 771T>C;1014_1015ins272 |
| 5 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | NM_018527.4 | 72.4% | 70.3% | 771T>C;905_906ins107;933_934ins246 |
| 6 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XM_011535227.3 | 53.2% | 52.4% | (many diffs) |
| 7 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | NM_024561.5 | 49.3% | 48.6% | (many diffs) |
| 8 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XM_006719866.3 | 42.3% | 41.6% | (many diffs) |
| 9 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XR_001749669.2 | 28.6% | (many diffs) | |
| 10 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XR_002957473.1 | 27.9% | (many diffs) | |
| 11 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XR_001749671.2 | 27% | (many diffs) | |
| 12 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XR_001749673.2 | 26.2% | (many diffs) | |
| 13 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XR_001749670.2 | 20.2% | (many diffs) | |
| 14 | human | 79612 | NAA16 | N(alpha)-acetyltransferase ... | XR_001749675.2 | 12.9% | (many diffs) | |
| 15 | mouse | 66897 | Naa16 | N(alpha)-acetyltransferase ... | XR_383205.1 | 57.3% | (many diffs) | |
| 16 | mouse | 66897 | Naa16 | N(alpha)-acetyltransferase ... | NM_025832.2 | 43.4% | 43.4% | (many diffs) |
| 17 | mouse | 66897 | Naa16 | N(alpha)-acetyltransferase ... | XR_001781145.1 | 35.3% | (many diffs) | |
| 18 | mouse | 66897 | Naa16 | N(alpha)-acetyltransferase ... | XM_006519399.1 | 29.7% | 28.9% | (many diffs) |
| 19 | mouse | 66897 | Naa16 | N(alpha)-acetyltransferase ... | XR_001781144.1 | 27.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1344
- ORF length:
- 1278
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgcc gaacgtgctg ctgccgccca aggagagcaa cctcttcaaa cgcatcttga 121 aatgttatga acagaagcag tacaaaaatg gcctcaagtt ttgcaagatg attctgtcga 181 acccaaaatt tgctgaacat ggagagactt tggctatgaa aggattaaca ctgaactgtt 241 taggaaaaaa agaagaagct tatgagtttg ttcgtaaagg acttcgtaat gatgtcaaga 301 gtcatgtctg ttggcatgta tatggactct tgcagcgttc tgataaaaaa tatgatgaag 361 ctataaaatg ttaccgaaat gccctcaaat tagataaaga taacctgcaa attttgaggg 421 atctctcact gttgcagatc caaatgagag accttgaagg ttaccgagag acaagatacc 481 agcttcttca gttgcgcccc acacagcgtg cctcctggat tggatatgct attgcatacc 541 atttgctgaa agattatgat atggccctaa aactgttgga agaatttaga caaactcagc 601 aagttcctcc aaacaaaata gattatgaat atagtgaatt gatattatac cagaatcaag 661 tgatgagaga ggcagatctg ttgcaggaat ctttggaaca tatagaaatg tatgagaaac 721 aaatatgtga taaacttttg gtggaagaaa ttaaagggga aatactgttg aaattgggaa 781 gattaaaaga agccagtgaa gtgttcaaaa acttgattga tcgaaatgca gaaaactggt 841 gttattatga aggcttggaa aaagctctac aaattagcac tttagaagag aggcttcaaa 901 tttatgaaga aattagtaag cagcacccca aagcaattac acccagaaga ttacctttga 961 ctcttgtccc aggtgaaaga tttagagaac taatggataa gttcctgagg gttaacttca 1021 gtaaaggctg cccacccttg tttactactt tgaaatcttt atattacaat acagaaaagg 1081 tttctataat ccaggaactt gttactaatt atgaagcctc tcttaaaacg tgtgactttt 1141 ttagcccata tgagaatggg gagaaggaac ccccgacaac actactctgg gttcagtatt 1201 tcctggcaca gcactttgat aaacttggac agtattcttt ggctttggat tatattaatg 1261 ctgcaattgc tagtactcca actctaatag aattattcta tatgaaagca aaaatttaca 1321 aggtaaaatc tgaatcctgt ttttgagtag ttgcccaact ttcttgtaca aagtggttgg 1381 taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag ctagcgctaa 1441 ccggtggcgc gttaagtcga caatcaacct ctggatta