Construct: ORF ccsbBroad304_14285
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017220.1_s304c1, BRDN0000409662
- Derived from:
- ccsbBroadEn_14285
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- TSGA10 (80705)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_14285
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 80705 | TSGA10 | testis specific 10 | NM_001349012.1 | 99.9% | 28.3% | 587delA;817C>A |
2 | human | 80705 | TSGA10 | testis specific 10 | NM_025244.4 | 99.9% | 28.3% | 587delA;817C>A |
3 | human | 80705 | TSGA10 | testis specific 10 | NM_182911.4 | 99.9% | 28.3% | 587delA;817C>A |
4 | human | 80705 | TSGA10 | testis specific 10 | XM_005264023.1 | 99.9% | 28.3% | 587delA;817C>A |
5 | human | 80705 | TSGA10 | testis specific 10 | XM_005264024.2 | 99.9% | 28.3% | 587delA;817C>A |
6 | human | 80705 | TSGA10 | testis specific 10 | XM_005264025.2 | 99.9% | 28.3% | 587delA;817C>A |
7 | human | 80705 | TSGA10 | testis specific 10 | XM_005264026.1 | 99.9% | 28.3% | 587delA;817C>A |
8 | human | 80705 | TSGA10 | testis specific 10 | XM_005264027.1 | 99.9% | 28.3% | 587delA;817C>A |
9 | human | 80705 | TSGA10 | testis specific 10 | XM_005264029.1 | 99.9% | 28.3% | 587delA;817C>A |
10 | human | 80705 | TSGA10 | testis specific 10 | XM_006712781.2 | 99.9% | 28.3% | 587delA;817C>A |
11 | human | 80705 | TSGA10 | testis specific 10 | XM_011511937.1 | 99.9% | 28.3% | 587delA;817C>A |
12 | human | 80705 | TSGA10 | testis specific 10 | XM_011511939.1 | 99.9% | 28.3% | 587delA;817C>A |
13 | human | 80705 | TSGA10 | testis specific 10 | XM_011511941.1 | 99.9% | 28.3% | 587delA;817C>A |
14 | human | 80705 | TSGA10 | testis specific 10 | XM_011511942.1 | 99.9% | 28.3% | 587delA;817C>A |
15 | human | 80705 | TSGA10 | testis specific 10 | XM_017005039.1 | 99.9% | 28.3% | 587delA;817C>A |
16 | human | 80705 | TSGA10 | testis specific 10 | XM_017005040.2 | 99.9% | 28.3% | 587delA;817C>A |
17 | human | 80705 | TSGA10 | testis specific 10 | XM_017005041.2 | 99.9% | 28.3% | 587delA;817C>A |
18 | human | 80705 | TSGA10 | testis specific 10 | XM_017005042.1 | 99.9% | 28.3% | 587delA;817C>A |
19 | human | 80705 | TSGA10 | testis specific 10 | XM_017005043.2 | 99.9% | 28.3% | 587delA;817C>A |
20 | human | 80705 | TSGA10 | testis specific 10 | XM_017005044.1 | 99.9% | 28.3% | 587delA;817C>A |
21 | human | 80705 | TSGA10 | testis specific 10 | XM_017005045.1 | 99.9% | 28.3% | 587delA;817C>A |
22 | human | 80705 | TSGA10 | testis specific 10 | XM_017005046.1 | 99.9% | 28.3% | 587delA;817C>A |
23 | human | 80705 | TSGA10 | testis specific 10 | XM_017005047.1 | 99.9% | 28.3% | 587delA;817C>A |
24 | human | 80705 | TSGA10 | testis specific 10 | XM_017005048.1 | 99.9% | 28.3% | 587delA;817C>A |
25 | human | 80705 | TSGA10 | testis specific 10 | XM_024453158.1 | 99.9% | 28.3% | 587delA;817C>A |
26 | human | 80705 | TSGA10 | testis specific 10 | XM_024453159.1 | 99.9% | 28.3% | 587delA;817C>A |
27 | human | 80705 | TSGA10 | testis specific 10 | XM_024453160.1 | 99.9% | 28.3% | 587delA;817C>A |
28 | human | 80705 | TSGA10 | testis specific 10 | XM_024453161.1 | 99.9% | 28.3% | 587delA;817C>A |
29 | human | 80705 | TSGA10 | testis specific 10 | XM_011511935.3 | 84.4% | 23.9% | 1_384del;971delA;1201C>A |
30 | human | 80705 | TSGA10 | testis specific 10 | NM_001349013.2 | 84.3% | 33.6% | 587delA;609_610ins327 |
31 | human | 80705 | TSGA10 | testis specific 10 | NM_001349014.1 | 84.3% | 33.6% | 587delA;609_610ins327 |
32 | human | 80705 | TSGA10 | testis specific 10 | XM_017005035.1 | 78% | 22.1% | 1_585del;1172delA;1402C>A |
33 | human | 80705 | TSGA10 | testis specific 10 | XM_011511934.1 | 77.6% | 22% | 1_600del;1187delA;1417C>A |
34 | human | 80705 | TSGA10 | testis specific 10 | XM_017005036.2 | 63.1% | 25.3% | (many diffs) |
35 | human | 80705 | TSGA10 | testis specific 10 | XM_017005037.1 | 59.8% | 26.6% | (many diffs) |
36 | human | 80705 | TSGA10 | testis specific 10 | XM_017005038.1 | 59.7% | 26.7% | (many diffs) |
37 | human | 80705 | TSGA10 | testis specific 10 | NR_146001.2 | 52.2% | (many diffs) | |
38 | mouse | 211484 | Tsga10 | testis specific 10 | NM_207228.3 | 88.8% | 26.9% | (many diffs) |
39 | mouse | 211484 | Tsga10 | testis specific 10 | NM_001290721.1 | 87.8% | 27.2% | (many diffs) |
40 | mouse | 211484 | Tsga10 | testis specific 10 | XM_017319574.1 | 87.3% | 26.7% | (many diffs) |
41 | mouse | 211484 | Tsga10 | testis specific 10 | XM_017319575.1 | 87.3% | 26.7% | (many diffs) |
42 | mouse | 211484 | Tsga10 | testis specific 10 | XM_017319576.1 | 87.3% | 26.7% | (many diffs) |
43 | mouse | 211484 | Tsga10 | testis specific 10 | NM_001290720.1 | 79% | 30.3% | (many diffs) |
44 | mouse | 211484 | Tsga10 | testis specific 10 | XM_017319578.1 | 77.2% | 16.3% | (many diffs) |
45 | mouse | 211484 | Tsga10 | testis specific 10 | XM_006495822.2 | 69% | 20.9% | (many diffs) |
46 | mouse | 211484 | Tsga10 | testis specific 10 | XM_011238461.1 | 68% | 20.8% | (many diffs) |
47 | mouse | 211484 | Tsga10 | testis specific 10 | XM_006495823.3 | 61.4% | 22.9% | (many diffs) |
48 | mouse | 211484 | Tsga10 | testis specific 10 | XM_017319571.1 | 61.3% | 22.5% | (many diffs) |
49 | mouse | 211484 | Tsga10 | testis specific 10 | XM_011238463.2 | 53.1% | 25.3% | (many diffs) |
50 | mouse | 211484 | Tsga10 | testis specific 10 | NR_110976.1 | 50.3% | (many diffs) | |
51 | mouse | 211484 | Tsga10 | testis specific 10 | XM_017319577.1 | 47.2% | 28.1% | (many diffs) |
52 | mouse | 211484 | Tsga10 | testis specific 10 | XR_001783692.1 | 47.1% | (many diffs) | |
53 | mouse | 211484 | Tsga10 | testis specific 10 | XR_865225.1 | 44.8% | (many diffs) | |
54 | mouse | 211484 | Tsga10 | testis specific 10 | XM_017319580.1 | 32.2% | 36.2% | (many diffs) |
55 | mouse | 211484 | Tsga10 | testis specific 10 | XM_017319581.1 | 30.3% | 37.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 672
- ORF length:
- 606
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgat gcgaagtagg tctaaaagtc caagacgccc atcaccaact gcccggggtg 121 caaactgtga tgtagaactt ttgaagacaa caacaagaga tcgtgaagaa cttaaatgca 181 tgctggaaaa atatgagcgc catttggcag aaattcaggg taatgtcaag gttcttaaat 241 ctgagagaga caagatcttc cttctttatg aacaggcaca ggaagaaatt acccgacttc 301 gacgagaaat gatgaaaagc tgtaagagtc ctaaatcaac aacggcacat gctattctcc 361 ggcgagtgga gactgaaaga gatgtagcct ttactgattt acgaagaatg accacagaac 421 gagatagtct aagggagagg ctaaagattg ctcaagagac agcatttaat gagaaggctc 481 acctggaaca aaggatagag gagctggagt gtacagttca taatcttgat gatgaacgta 541 tggagcaaat gtcaaatatg actttgatga aggaaaccat aagcactgtg gaaaaagaaa 601 tgaaatcact agcaagaaag gcaatggata ccgaaagtga acttggcaga caaaagcaga 661 gaataattct ttgagacttt tgtatgaaaa cacagaaaaa gatctttctg atactcagcg 721 acaccttgct aagaaaaaat atgagctaca gcttactcag gagaaaatta tgtgcttgga 781 tgaaaaaatt gataacttta caaggcaaaa tattgcacag cgagaagaaa tcagcattct 841 tggtggaacc ctcaatgatc tggctaaaga aaaggaatgc atgcaagcat gtttggataa 901 aaaatctgag aatattgcat cccttggaga gagtttggca atgaaagaaa agaccatttc 961 aggcatgaag aatatcattg ctgagatgga acaggcatca agacagtgta ctgaggccct 1021 aattgtgtgt gaacaagacg tttccagaat gcgtcggcaa ttggatgaga caaatgatga 1081 gctggcccag atcgccaggg aaagagatat cttggctcat gacaatgaca atctccagga 1141 acagtttgct aaagctaaac aagaaaacca ggcactgtcc aaaaaattga atgacactca 1201 taatgaactt aatgacataa aacagaaggt tcaagatact aatttggagg ttaacaagct 1261 gaagaatata ttaaagtctg aagaatctga gaaccggcaa atgatggaac aacttcgaaa 1321 agccaatgaa gatgctgaaa actgggaaaa taaagcccgt caatcagagg cagataacaa 1381 taccctcaaa ctggaactta tcactgctga ggcagagggt aacagattaa aagaaaaagt 1441 agattccctc aacagagagg ttgagcaaca cttaaatgca gaaaggtctt acaagtccca 1501 gatttctacc ttacataaat ctgttgtaaa aatggaagag gagcttcaga aggttcagtt 1561 tgaaaaagtg tccgctcttg cagatttgtc ttctactagg gaactctgta ttaaacttga 1621 ctcaagcaaa gaacttctta atcgacagct ggttgctaaa gatcaagaaa tagaaatgag 1681 ggagaatgag ttagattctg ctcattctga aattgaactc ctgaggagtc agatggcaaa 1741 tgagagaatc tccatgcaga atctagaagc tttgctggtg gccaatcgag acaaagaata 1801 tcagtctcag atagcacttc aagaaaaaga atctgaaatt cagcttctta aagaacacct 1861 ttgtttggca gaaaataaaa tggccatcca gagtagagat gtggcccagt tcagaaatgt 1921 tgtcacacaa ttggaagctg atttagacat taccaaaaga caactaggaa cagagcgctt 1981 tgaaagggag agggccgtac aagaacttcg ccgccaaaat tattcaagta atgcttatca 2041 tatgagttct acaatgaagc caaatacaaa atgtcattca ccagaacgtg ctcaccatcg 2101 atctcctgac cgaggcctag atcgatcatt agaagagaat ctttgctaca gagatttctg 2161 cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc tcggtctcga 2221 ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg 2281 gatta