Construct: ORF ccsbBroad304_14308

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000925.1_s304c1, BRDN0000462104
Derived from:
ccsbBroadEn_14308
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
ATP13A4 (84239)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14308
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84239 ATP13A4 ATPase 13A4 XM_017007319.1 90.8% 43.2% 1202_1203insA;1208_1209insG;2520_2772delinsG
2 human 84239 ATP13A4 ATPase 13A4 XM_011513232.2 88.4% 42% 1202_1203insA;1208_1209insG;2520_2847delinsG
3 human 84239 ATP13A4 ATPase 13A4 XR_001740325.1 76.7% (many diffs)
4 human 84239 ATP13A4 ATPase 13A4 NM_032279.4 70.1% 33.4% 1202_1203insA;1208_1209insG;2520_3588delinsG
5 human 84239 ATP13A4 ATPase 13A4 XR_001740324.2 63% (many diffs)
6 human 84239 ATP13A4 ATPase 13A4 XM_017007318.1 61% 24.3% (many diffs)
7 human 84239 ATP13A4 ATPase 13A4 XR_924191.3 58.3% (many diffs)
8 human 84239 ATP13A4 ATPase 13A4 XR_002959602.1 49.4% (many diffs)
9 mouse 224079 Atp13a4 ATPase type 13A4 NM_001164613.1 81.5% 39.7% (many diffs)
10 mouse 224079 Atp13a4 ATPase type 13A4 XM_017316956.1 81.5% 39.7% (many diffs)
11 mouse 224079 Atp13a4 ATPase type 13A4 XM_006522054.3 77.2% 37.3% (many diffs)
12 mouse 224079 Atp13a4 ATPase type 13A4 XM_006522053.3 75.9% 36.6% (many diffs)
13 mouse 224079 Atp13a4 ATPase type 13A4 XM_006522051.3 64.5% 31.1% (many diffs)
14 mouse 224079 Atp13a4 ATPase type 13A4 XM_017316955.1 63.8% 30.8% (many diffs)
15 mouse 224079 Atp13a4 ATPase type 13A4 NM_001164612.1 60.7% 29.3% (many diffs)
16 mouse 224079 Atp13a4 ATPase type 13A4 NM_172613.4 59.2% 29.9% (many diffs)
17 mouse 224079 Atp13a4 ATPase type 13A4 XM_006522048.3 57.7% 26.1% (many diffs)
18 mouse 224079 Atp13a4 ATPase type 13A4 XR_384556.3 50.8% (many diffs)
19 mouse 224079 Atp13a4 ATPase type 13A4 XR_001781812.1 42.1% (many diffs)
20 mouse 224079 Atp13a4 ATPase type 13A4 XR_384557.3 41.2% (many diffs)
21 mouse 224079 Atp13a4 ATPase type 13A4 XM_006522055.3 22.5% 3.2% (many diffs)
22 mouse 224079 Atp13a4 ATPase type 13A4 XM_006522056.3 20.3% 9.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1287
ORF length:
1218
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gggacacttt gagaagggcc agcacgctct gctcaatgaa ggagaagaga
121atgagatgga gatatttggc tatcggactc aaggctgccg gaaaagtctc tgccttgccg
181gatccatctt ctcatttgga atcctcccct tggtgtttta ctggagacca gcatggcacg
241tatgggcaca ttgtgtccca tgttccttgc aagaagcaga cactgtgttg ctgaggacaa
301cggatgaatt ccaaatttac tcttggaaaa aggtaatatg gatctacctg tcagcattaa
361acagcgcatt tggtctcact cctgaccacc ctctcatgac agatgaggag tatatcataa
421atagagccat aagaaagcca gacctaaagg tgagatgcat caaagtgcag aaaataagat
481atgtttggaa ctacttagaa ggacagttcc agaaaattgg ttctttggaa gactggctta
541gttctgccaa gatacatcaa aaatttggat caggcttgac aagagaagaa caggagatta
601ggaggttaat atgtgggcct aatactatcg atgttgaagt tacaccaatt tggaaactgc
661tcatcaagga ggttctaaat ccattttata tatttcaact cttcagtgtc tgtttgtggt
721ttagtgaaga ctataaggaa tatgcttttg ccatcataat catgtccata atttccatat
781ctttgacagt atatgatctc agagagcaat ctgtaaaact ccaccatctc gtcgagtcac
841ataatagcat tacggtctct gtatgtggga gaaaagctgg agttcaagag ctggaatcac
901gcgtcctggt gcctggagat ttattaattt tgacagggaa caaagtgcta atgccatgtg
961atgccgttct gattgaaggc agctgtgtgg tggatgaagg catgctgaca ggagaaagta
1021ttccagtcac caaaactccg ttacccaaga tggatagctc tgtgccctgg aaaacacaga
1081gtgaagcgga ttacaagcgg catgtcctct tctgtggaac agaggttatc caggccaagg
1141cagcttgctc tgggaccgtg agagccgtgg tactgcagac tggattcaac actgcaaagg
1201gagaccttgt gagatccatt ctctacccta agccagtgaa ttttcagttg tacagggatg
1261ccatcaggtt acctcctggt gccttgtagg aacagccacc attgggatga tctatactct
1321gtgtgtctat gtgcttagtg gggaacctcc agaggaggtg gtgaggaaag cccttgacgt
1381catcacaatt gcggttcctc cggctctacc tgctgctctg accacaggca ttatctatgc
1441ccagaggagg ctgaagaaga gaggcatctt ctgcattagc ccccagagga tcaacgtatg
1501tggacagtta aaccttgtct gctttgacaa gacaggcacc ttaacaaggg acggcttgga
1561cctctgggga gtcgtgtcct gtgataggaa tggctttcag gaagttcaca gctttgcctc
1621aggccaggct ttgccatggg gcccactgtg tgcagcgatg gccagctgcc actctctgat
1681ccttcttgat gggaccatcc agggagaccc tctggacctc aaaatgtttg aagccaccac
1741ctgggaaatg gctttttctg gggacgattt ccacatcaag ggagtgccgg cacatgccat
1801ggtagttaag ccctgcagaa cagccagcca ggtcccagtg gaaggaattg caatcctgca
1861tcagttccca ttctcatcgg cactgcaaag aatgacagtc attgtccaag agatgggagg
1921tgaccgactg gcattcatga aaggtgcacc agagagggtg gccagctttt gccaacctga
1981gacagtaccc actagttttg ttagcgaact tcagatttac acgacacagg gcttccgagt
2041catagcactg gcctacaaga agctggaaaa tgaccatcac gctactacct tgacgaggga
2101gacggtagaa tcagacctga tatttctggg gctgctgatc ttggagaatc gattgaagga
2161agagacaaaa cctgtcttgg aagagctcat ctcagcccgg ataaggactg taatgatcac
2221aggtgacaat cttcagactg caataacagt ggccagaaaa tctggaatgg tttctgaaag
2281ccagaaagtc attctcattg aggcaaatga aaccaccggg tcctcatcag catctatatc
2341ttggacgtta gtagaagaga agaaacacat tatgtatggg aatcaggaca attacattaa
2401catcagggat gaagtctctg ataaaggcag agaaggaagt taccattttg ccctaactgg
2461aaaatccttt catgttataa gtcaacattt cagcagccta ctgccaaaga tattgatcaa
2521tgggaccatc tttgcaagaa tgtctcctgg gcagaagtcc agtctggtgg aagaatttca
2581gaaactggag ttgccaactt tcttgtacaa agtggttggt aagcctatcc ctaaccctct
2641cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac
2701aatcaacctc tggatta

Download FASTA (ORF) (Full)