Construct: ORF ccsbBroad304_14379

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006455.1_s304c1, BRDN0000399820
Derived from:
ccsbBroadEn_14379
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
FAM131A (131408)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14379
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 131408 FAM131A family with sequence simila... NM_001171093.1 99.8% 1% 7delC
2 human 131408 FAM131A family with sequence simila... NM_001366133.1 99.8% 1% 7delC
3 human 131408 FAM131A family with sequence simila... NM_001366134.1 99.8% 1% 7delC
4 human 131408 FAM131A family with sequence simila... XM_005247114.3 99.8% 1% 7delC
5 human 131408 FAM131A family with sequence simila... NM_144635.5 76.6% .8% 1_255del;262delC
6 mouse 78408 Fam131a family with sequence simila... XM_006522740.3 87.1% 1% (many diffs)
7 mouse 78408 Fam131a family with sequence simila... XM_006522741.3 87.1% 1% (many diffs)
8 mouse 78408 Fam131a family with sequence simila... XM_006522742.3 87.1% 1% (many diffs)
9 mouse 78408 Fam131a family with sequence simila... XM_006522738.3 68.6% .8% (many diffs)
10 mouse 78408 Fam131a family with sequence simila... NM_133778.2 66.9% .8% (many diffs)
11 mouse 78408 Fam131a family with sequence simila... XM_017317161.1 43.3% 1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
90
ORF length:
24
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct gccaagtccc ggcgagccct aactatccag gagatcgctg cgctggccag
121gtcctccctg catggtattt cccaggtggt gaaggaccac gtgaccaagc ctaccgccat
181ggcccagggc cgagtggctc acctcattga gtggaagggc tggagcaagc cgagtgactc
241acctgctgcc ctggaatcag ccttttcctc ctattcagac ctcagcgagg gcgaacaaga
301ggctcgcttt gcagcaggag tggctgagca gtttgccatc gcggaagcca agctccgagc
361atggtcttcg gtggatggcg aggactccac tgatgactcc tatgatgagg actttgctgg
421gggaatggac acagacatgg ctgggcagct gcccctgggg ccgcacctcc aggacctgtt
481caccggccac cggttctccc ggcctgtgcg ccagggctcc gtggagcctg agagcgactg
541ctcacagacc gtgtccccag acaccctgtg ctctagtctg tgcagcctgg aggatgggtt
601gttgggctcc ccggcccggc tggcctccca gctgctgggc gatgagctgc ttctcgccaa
661actgcccccc agccgggaaa gtgccttccg cagcctgggc ccactggagg cccaggactc
721actctacaac tcgcccctca cagagtcctg cctttccccc gcggaggagg agccagcccc
781ctgcaaggac tgccagccac tctgcccacc actaacgggc agctgggaac ggcagcggca
841agcctctgac ctggcctctt ctggggtggt gtccttagat gaggatgagg cagagccaga
901ggaacagtgc ccaactttct tgtacaaagt ggttggtaag cctatcccta accctctcct
961cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta agtcgacaat
1021caacctctgg atta

Download FASTA (ORF) (Full)