Construct: ORF ccsbBroad304_14505
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006871.1_s304c1, BRDN0000461776
- Derived from:
- ccsbBroadEn_14505
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to frame shift)
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC25A51P1 (442229)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_14505
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 92014 | SLC25A51 | solute carrier family 25 me... | NM_033412.4 | 21.8% | 20.2% | (many diffs) |
| 2 | human | 147407 | SLC25A52 | solute carrier family 25 me... | NM_001034172.4 | 21.7% | 19.8% | (many diffs) |
| 3 | human | 442229 | SLC25A51P1 | SLC25A51 pseudogene 1 | NR_026540.1 | 12.7% | 1_538del;735_736delAT;746_1605del | |
| 4 | human | 494141 | SLC25A51P4 | SLC25A51 pseudogene 4 | NR_026564.1 | 10.7% | (many diffs) | |
| 5 | human | 494141 | SLC25A51P4 | SLC25A51 pseudogene 4 | NR_026563.1 | 9.9% | (many diffs) | |
| 6 | human | 494141 | SLC25A51P4 | SLC25A51 pseudogene 4 | NR_026541.1 | 8.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 276
- ORF length:
- 207
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggattcagaa gctcatgaaa agaggccacc aacactaaca tcttcagaac 121 aagatatatc acctcgtatt acaaatgttg gtgaaatgaa gcattacttg tgtggctgct 181 gcgcagcctt caacaacatc gcaatcacat atcccattca gacggtcctc tttcgacaac 241 agctgtatgg catcaaaacc cggggcaata tttttgccaa ctttcttgta caaagtggtt 301 ggtaagccta tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct 361 aaccggtggc gcgttaagtc gacaatcaac ctctggatta