Construct: ORF ccsbBroad304_14866
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018955.1_s304c1, BRDN0000459439
- Derived from:
- ccsbBroadEn_14866
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- TPR (7175)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_14866
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7175 | TPR | translocated promoter regio... | NM_003292.3 | 96.2% | 10.4% | (many diffs) |
| 2 | mouse | 108989 | Tpr | translocated promoter regio... | NM_133780.3 | 82.4% | 9.3% | (many diffs) |
| 3 | mouse | 108989 | Tpr | translocated promoter regio... | XM_006529065.2 | 82.3% | 9.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 840
- ORF length:
- 771
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcggcggtg ttgcagcaag tcctggagcg cacggagctg aacaagctgc 121 ccaagtctgt ccagaacaaa cttgaaaagt tccttgctga tcagcaatcc gagatcgatg 181 gcctgaaggg gcggcatgag aaatttaagg tggagagcga acaacagtat tttgaaatag 241 aaaagaggtt gtcccacagt caggagagac ttgtgaatga aacccgagag tgtcaaagct 301 tgcggcttga gctagagaaa ctcaacaatc aactgaaggc actaactgag aaaaacaaag 361 aacttgaaat tgctcaggat cgcaatattg ccattcagag ccaatttaca agaacaaagg 421 aagaattaga agctgagaaa agagacttaa ttagaaccaa tgagagacta tctcaagaac 481 ttgaatactt aacagaggat gttaaacgtc tgaatgaaaa acttaaagaa agcaatacaa 541 caaagggtga acttcagtta aaattggatg aacttcaagc ttctgatgtt tctgttaagt 601 atcgagaaaa acgcttggag caagaaaagg aattgctaca tagtcagaat acatggctga 661 atacagagtt gaaaaccaaa actgatgaac ttctggctct tggaagagaa aaagggaatg 721 agattctaga gcttaaatgt aatcttgaaa ataaaaaagn agaggtttct agactggaag 781 nacaaatgaa tggctttaaa acatcaaatg aacatctcaa aagcatgtgg aggatctgtt 841 gaccaaatta aaagaggcca aggaacaaca ggccagtatg gaagagaaat tccacaatga 901 attaaatgcc cacataaaac tttctaattt gtacaagagt gccgctgatg actcagaagc 961 aaagagcaat gaactaaccc gggcagtaga ggaactacac aaacttttga aagaagctgg 1021 tgaagccaac aaagcaatac aagatcatct tctagaggtg gagcaatcca aagatcaaat 1081 ggaaaaagaa atgcttgaga aaatagggag attggagaag gaattagaga atgcaaatga 1141 ccttctttct gccacaaaac gtaaaggagc catattgtct gaagtatttg tggaggcaga 1201 atctgaaggt attagttcag aagcaggcct agaaattgat agccagcagg aagaagagcc 1261 ggttcaagca tctgatgagt cagatctccc ctccaccagc caggatcctc cttctagctc 1321 atctgtagat actagtagta gtcaaccaaa gcctttcaga cgagtaagac ttcagacaac 1381 attgagacaa ggtgtccgtg gtcgtcagtt taacagacag agaggtgtga gccatgcaat 1441 gggagggaga ggaggaataa acagaggaaa tattaatttg ccaactttct tgtacaaagt 1501 tggcattata agaaagcatt gcttatcaat ttgttgcaac gaacaggtca ctatcagtca 1561 aaataaaatc attattgcca tccagctatg aggtgtactt gagagagata atcgaagaat 1621 ggaaatacaa gtaaaagatc tttcacaaca gattagagtg cttttgatgg aacttgaaga 1681 agcaaggggt aaccacgtaa ttcgtgatga ggaagtaagc tctgctgata taagtagttc 1741 atctgaggta atatcacagc atctagtatc ttacagaaat attgaagagc ttcaacaaca 1801 aaatcaacgt ctcttagtgg cccttagaga gcttggggaa accagagaaa gagaagaaca 1861 agaaacaact tcatccaaaa tcactgagct tcagctcaaa cttgagagtg cccttactga 1921 actagaacaa ctccgcaaat cacgacagca tcaaatgcag cttgttgatt ccatagttcg 1981 tcagcgtgat atgtaccgta ttttattgtc acaaacaaca ggagttgcca ttccattaca 2041 tgcttcaagc ttagatgatg tttctcttgc atcaactcca aaacgtccaa gtacatcaca 2101 gactgtttcc actcctgctc cagtacctgt tattgaatca acagaggcta tagaggctaa 2161 ggctgccctt aaacagttgc aggaaatttt tgagaactac aaaaaagaaa aagcagaaaa 2221 tgaaaaaata caaaatgagc agcttgagaa acttcaagaa caagttacag atttgcgatc 2281 acaaaatacc aaaatttcta cccagctaga ttttgcttct aaacgttatg aaatgctgca 2341 agataatgtt gaaggatatc gtcgagaaat aacatcactt catgagagaa atcagaaact 2401 cactgccaca actcaaaagc aagaacagat tatcaatacg atgactcaag atttgagagg 2461 agcaaatgag aagctagctg tcgcagaagt aagagcagaa aatttgaaga aggaaaagga 2521 aatgcttaaa ttgtctgaag ttcgtctttc tcagcaaaga gagtctttgt tagctgaaca 2581 aagggggcaa aacttactgc taactaatct gcaaacaatt cagggaatac tggagcgatc 2641 tgaaacagaa accaaacaaa ggcttagtag ccagatagaa aaactggaac atgagatctc 2701 tcatctaaag aagaagttgg aaaatgaggt ggaacaaagg catacactta ctagaaatct 2761 agatgttcaa cttttagata caaagagaca actggataca gagacaaatc ttcatcttaa 2821 cacaaaagaa ctattaaaaa atgctcaaaa agaaattgcc acattgaaac agcacctcag 2881 taatatggaa gtccaagttg cttctcagtc ttcacagaga actggtaaag gtcagcctag 2941 caacaaagaa gatgtggatg atcttgtgag tcagctaaga cagacagaag agcaggtgaa 3001 tgacttaaag gagagactca aaacaagtac gagcaatgtg gaacaatatc aagcaatggt 3061 tactagttta gaagaatccc tgaacaagga aaaacaggtg acagaagaag tgcgtaagaa 3121 tattgaagtt cgtttaaaag agtcagctga atttcagaca cagttggaaa agaagttgat 3181 ggaagtagag aaggaaaaac aagaacttca ggatgataaa agaagagcca tagagagcat 3241 ggaacaacag ttatctgaat tgaagaaaac actttctagt gttcagaatg aagtacaaga 3301 agctcttcag agagcaagca cagctttaag taatgagcag caagccagac gtgactgtca 3361 ggaacaagct aaaatagctg tggaagctca gaataagtat gagagagaat tgatgctgca 3421 tgctgctgat gttgaagctc tacaagctgc gaaggagcag gtttcaaaaa tggcatcagt 3481 ccgtcagcat ttggaagaaa caacacagaa agcagaatca cagttgttgg agtgtaaagc 3541 atcttgggag gaaagagaga gaatgttaaa ggatgaagtt tccaaatgtg tatgtcgctg 3601 tgaagatctg gagaaacaaa acagattact tcatgatcag atcgaaaaat taagtgacaa 3661 ggtcgttgcc tctgtgaagg aaggtgtaca aggtccactg aatgtatctc tcagtgaaga 3721 aggaaaatct caagaacaaa ttttggaaat tctcagattt atacgacgag aaaaagaaat 3781 tgctgaaact aggtttgagg tggctcaggt tgagagtctg cgttatcgac aaagggttga 3841 acttttagaa agagagctgc aggaactgca agatagtcta aatgctgaaa gggagaaagt 3901 ccaggtaact gcaaaaacaa tggctcagca tgaagaactg atgaagaaaa ctgaaacaat 3961 gaatgtagtt atggagacca ataaaatgct aagagaagag aaggagagac tagaacagga 4021 tctacagcaa atgcaagcaa aggtgaggaa actggagtta gatattttac ccttacaaga 4081 agcaaatgct gagctgagtg agaaaagcgg tatgttgcag gcagagaaga agctcttaga 4141 agaggatgtc aaacgttgga aagcacgtaa ccagcatcta gtaagtcaac agaaagatcc 4201 agatacagaa gaatatcgga agctcctttc tgaaaaggaa gttcatacta agcgtattca 4261 acaattgaca gaagaaattg gtagacttaa agctgaaatt gcaagatcaa atgcatcttt 4321 gactaacaac cagaacttaa ttcagagtct gaaggaagat ctaaataaag taagaactga 4381 aaaggaaacc atccagaagg acttagatgc caaaataatt gatatccaag aaaaagtcaa 4441 aactattact caagttaaga aaattggacg taggtacaag actcaatatg aagaacttaa 4501 agcacaacag gataaggtta tggagacatc ggctcagtcc tctggagacc atcaggagca 4561 gcatgtttca gtccaggaaa tgcaggaact caaagaaacg ctcaaccaag ctgaaacaaa 4621 atcaaaatca cttgaaagtc aagtagagaa tctgcagaag acattatctg aaaaagagac 4681 agaagcaaga aatctccagg aacagactgt gcaacttcag tctgaacttt cacgacttcg 4741 tcaggatctt caagatagaa ccacacagga ggagcagctc cgacaacaga taactgaaaa 4801 ggaagaaaaa accagaaagg ctattgtagc agcaaagtca aaaattgcac acttagctgg 4861 tgtaaaagat cagctaacta aagaaaatga ggagcttaaa caaaggaatg gagccttaga 4921 tcagcagaaa gatgaattgg atgttcgcat tactgcgcta aagtcccaat atgaaggtcg 4981 aattagtcgc ttggaaagag aactcaggga gcatcaagag agacaccttg agcagagaga 5041 tgagcctcaa gaaccttcta ataaggtccc tgaacagcag agacagatca cattgaaaac 5101 aactccagct tctggtgaaa gaggaattgc cagcacatca gacccaccaa cagccaatat 5161 caagccaact cctgttgtgt ctactccaag taaagtgaca gctgcagcta tggctggaaa 5221 taagtcaaca cccagggcta gtatccgccc aatggttaca cctgcaactg ttacaaatcc 5281 cactactacc ccaacagcta cagtgatgcc cactacacaa gtggaatcac aggaagctat 5341 gcagtcagaa gggcctgtgg aacatgttcc agtttttgga agcacaagtg gatccgttcg 5401 ttctactagt cctaatgtcc agccttctat ctctcaacct attttaactg ttcagcaaca 5461 aacacaggct acagcttttg tgcaacccac tcaacagagt catcctcaga ttgagcctgc 5521 caatcaagag ttatcttcaa acatagtaga ggttgttcag agttcaccag ttgagcggcc 5581 ttctacttcc acagcagtat ttggcacagt ttcggctacc cccagttctt ctttgccaaa 5641 gcgtacacgt gaagaggaag aggatagcac catagaagca tcagaccaag tctctgatga 5701 tacagtggaa atgcctcttc caaagaagtt gaaaagtgtc acacctgtag gaactgagga 5761 agaagttatg gcagaagaaa gtactgatgg agaggtagag actcaggtat acaaccagga 5821 ttctcaagat tccattggag aaggagttac ccagggagat tatacaccta tggaagacag 5881 tgaagaaacc tctcagtctc tacaaataga tcttgggcca cttcaatcag atcagcagac 5941 gacaacttca tcccaggatg gtcaaggcaa aggagatgat gtcattgtaa ttgacagtga 6001 tgatgaagaa gaggatgatg atgaaaatga tggagaacat gaggattatg aagaggatga 6061 ggaagatgat gatgatgatg aagatgacac agggatggga gatgagggtg aagatagtaa 6121 tgaaggaact ggtagtgccg atggcaatga tggttatgaa gctgatgatg ctgagggtgg 6181 tgatgggact gatccaggta cagaaacaga agaaagtatg ggtggaggtg aaggtaatca 6241 cagagctgct gattctcaaa acagtggtga aggaaataca ggtgctgcag aatcttcttt 6301 ttctcaggag gtttctagag aacaacagcc atcatcagca tctgaaagac aggcccctcg 6361 agcacctcag tcaccgagac gcccaccaca tccacttccc ccaagactga ccattcatgc 6421 cccacctcag gagttgggac caccagttca gagaattcag atgacccgaa ggcagtctgt 6481 aggacgtggc cttcagttga ctccaggaat aggtggcatg caacagcatt tttttgatga 6541 tgaagacaga acagttccaa gtactccaac tcttgtggtg ccacatcgta ctgatggatt 6601 tgctgaagca attcattcgc cgcaggttgc tggtgtccct agattccggt ttgggccacc 6661 tgaagatatg ccacaaacaa gttctagtca ctctgatctt ggccagcttg cttctcaagg 6721 aggtttagga atgtatgaaa cacccctgtt cctagctcat gaagaagagt caggtggccg 6781 aagtgttccc actactccac tacaagtagc agccccagtg actgtattta ctgagagcac 6841 cacctctgat gcttcggaac atgcctctca atctgttcca atggtgacta catccactgg 6901 cactttatct acaacaaatg aaacagcaac aggtgatgat ggagatgaag tatttgtgga 6961 ggcagaatct gaaggtatta gttcagaagc aggcctagaa attgatagcc agcaggaaga 7021 agagccggtt caagcatctg atgagtcaga tctcccctcc accagccagg atcctccttc 7081 tagctcatct gtagatacta gtagtagtca accaaagcct ttcagacgag taagacttca 7141 gacaacattg agacaaggtg tccgtggtcg tcagtttaac agacagagag gtgtgagcca 7201 tgcaatggga gggagaggag gaataaacag aggaaatatt aatttgccaa ctttcttgta 7261 caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta cgtagtaatg 7321 agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta