Construct: ORF ccsbBroad304_15146
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015434.1_s304c1, BRDN0000403912
- Derived from:
- ccsbBroadEn_15146
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF343 (79175)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15146
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001282495.1 | 99.7% | 99.4% | 1205T>C;1778_1779delTCinsGA;1781G>A |
| 2 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001282496.2 | 99.7% | 99.4% | 1205T>C;1778_1779delTCinsGA;1781G>A |
| 3 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001321800.2 | 99.7% | 99.4% | 1205T>C;1778_1779delTCinsGA;1781G>A |
| 4 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_024325.6 | 99.7% | 99.4% | 1205T>C;1778_1779delTCinsGA;1781G>A |
| 5 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001321805.2 | 99.6% | 99.3% | (many diffs) |
| 6 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001321802.2 | 93.5% | 93.1% | (many diffs) |
| 7 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001321803.2 | 93.5% | 93.1% | (many diffs) |
| 8 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001282497.2 | 93.3% | 93.1% | (many diffs) |
| 9 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001321801.2 | 93.3% | 93.1% | (many diffs) |
| 10 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001282498.1 | 84.7% | 84.4% | (many diffs) |
| 11 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001282499.2 | 19.1% | 16.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1863
- ORF length:
- 1797
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgat gttgccttat ccttcagcac tgggagatca atactgggaa gagattttgc 121 ttccaaagaa tggggaaaat gtagagacta tgaagaaatt gacccaaaat cataaagcga 181 aaggcttgcc ttctaatgat actgactgcc cccagaaaaa ggagggaaag gcccaaatag 241 tggtaccagt tacattcagg gatgtgactg tgatcttcac agaagcagaa tggaagagac 301 tgagtccaga gcagaggaat ctatacaaag aagtgatgct ggagaattac aggaatcttc 361 tctcattggc agaaccaaag ccagaaatct acacttgttc ctcctgcctt ctggccttct 421 cctgtcagca gttcctcagt caacatgtac ttcagatctt cctgggctta tgtgcagaaa 481 atcacttcca tccagggaat tctagcccag ggcattggaa acagcagggg cagcagtatt 541 cccatgtaag ctgttggttt gaaaatgcag aaggtcagga gagaggaggt ggctccaaac 601 cctggtctgc aaggacagag gagagagaaa cctcaagggc attccccagc ccactccaaa 661 gacagtcagc aagtcctaga aaaggcaaca tggtggtaga aacagagccc agctcagccc 721 aaagaccaaa ccctgtgcag ctagacaaag gcttgaagga attagaaacc ttgagatttg 781 gagcaatcaa ctgtagagag tatgaaccgg accataacct ggaatcaaac tttattacaa 841 acccgaggac cctcttaggg aagaagccct acatttgcag tgattgtggg cgaagcttta 901 aagatagatc aaccctcatc agacaccatc gtatacactc gatggagaag ccttatgtgt 961 gcagtgagtg cgggcgaggt tttagccaga agtccaacct cagcagacac cagagaacac 1021 attcagaaga gaagccttat ttgtgcaggg agtgtgggca aagctttaga agtaagtcca 1081 tcctcaatag acatcagtgg actcactcag aggagaagcc ctatgtttgc agcgagtgtg 1141 ggcgaggctt tagcgagaag tcatccttca tcagacacca gaggacacac tccggtgaga 1201 aaccctatgt gtgcctggag tgtggacgaa gcttttgtga taagtcaacc ctcagaaaac 1261 accagaggac acactcaggg gagaagcctt atgtttgcag ggagtgtggg cgaggcttta 1321 gccagaactc agatctcatc aaacaccaga ggacacactt ggatgagaag ccttatgttt 1381 gcagggagtg tgggcgaggc ttttgtgaca agtcaaccct catcatacac gagcggacgc 1441 actctggaga gaagccttat gtgtgtggtg agtgtggccg aggctttagt cggaaatcac 1501 tcctccttgt ccaccagagg acacactcag gggagaagca ttatgtctgc agggagtgta 1561 ggcgaggttt tagccagaag tcaaatctca tcagacacca gaggacgcac tcaaatgaga 1621 agccttatat ttgcagggaa tgtgggcgag gcttttgtga caagtcaacc ctcattgtac 1681 atgagaggac acactcagga gagaagcctt acgtgtgcag tgagtgtggc cgaggcttta 1741 gccggaaatc actcctcctt gtccaccaga ggacacactc aggggagaag cattatgttt 1801 gtagggagtg tgggcgaggc tttagtcata agtcaaatct cagaaaacac cagaggacac 1861 actgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc 1921 tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc 1981 tctggatta