Construct: ORF ccsbBroad304_15213

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001445.2_s304c1, BRDN0000459526
Derived from:
ccsbBroadEn_15213
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PLXNA4 (91584)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15213
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 91584 PLXNA4 plexin A4 NM_181775.3 99.8% 99.8% 1395G>C;1424A>C
2 human 91584 PLXNA4 plexin A4 NM_001105543.2 91.2% 87.1% (many diffs)
3 human 91584 PLXNA4 plexin A4 XR_927546.2 34.9% (many diffs)
4 human 91584 PLXNA4 plexin A4 XM_011516676.2 34.7% 32.5% (many diffs)
5 human 91584 PLXNA4 plexin A4 XM_017012779.1 27.3% 25.6% (many diffs)
6 human 91584 PLXNA4 plexin A4 NM_020911.1 26.4% 24.7% (many diffs)
7 human 91584 PLXNA4 plexin A4 XM_005250686.5 26.4% 24.7% (many diffs)
8 human 91584 PLXNA4 plexin A4 XM_006716171.4 26.4% 24.7% (many diffs)
9 mouse 243743 Plxna4 plexin A4 NM_175750.3 23.6% 23.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1632
ORF length:
1566
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa agccatgccc tggaactgga cctgccttct ctcccacctc ctcatggtgg
121gcatgggctc ctccactttg ctcacccggc agccagcccc gctgtcccag aagcagcggt
181catttgtcac attccgagga gagcccgccg agggtttcaa tcacctggtg gtggatgaga
241ggacaggaca catttacttg ggggccgtca atcggattta caagctctcc agcgacctga
301aggtcttggt gacgcatgag acagggccgg acgaggacaa ccccaagtgt tacccacccc
361gcatcgtcca gacctgcaat gagcccctga ccaccaccaa caatgtcaac aagatgctcc
421tcatagacta caaggagaac aggctgattg cctgtgggag cctgtaccaa ggcatctgca
481agctgctgag gctggaggac ctcttcaagc tgggggagcc ttatcataag aaggagcact
541atctgtcagg tgtcaacgag agcggctcag tctttggagt gatcgtctcc tacagcaacc
601tggatgacaa gctgttcatt gccacggcag tggatgggaa gcccgagtat tttcccacca
661tctccagccg gaaactgacc aagaactctg aggcggatgg catgttcgcg tacgtcttcc
721atgatgagtt cgtggcctcg atgattaaga tcccttcgga caccttcacc atcatccctg
781actttgatat ctactatgtc tatggtttta gcagtggcaa ctttgtctac tttttgaccc
841tccaacctga gatggtgtct ccaccaggct ccaccaccaa ggagcaggtg tatacatcca
901agctcgtgag gctttgcaag gaggacacag ccttcaactc ctatgtagag gtgcccattg
961gctgtgagcg cagtggggtg gagtaccgcc tgctgcaggc tgcctacctg tccaaagcgg
1021gggccgtgct tggcaggacc cttggagtcc atccagatga tgacctgctc ttcaccgtct
1081tctccaaggg ccagaagcgg aaaatgaaat ccctggatga gtcggccctg tgcatcttca
1141tcttgaagca gataaatgac cgcattaagg agcggctgca gtcttgttac cggggcgagg
1201gcacgctgga cctggcctgg ctcaaggtga aggacatccc ctgcagcagt gcgctcttaa
1261ccattgacga taacttctgt ggcctggaca tgaatgctcc cctgggagtg tccgacatgg
1321tgcgtggaat tcccgtcttc acggaggaca gggaccgcat gacgtctgtc atcgcatatg
1381tctacaagaa ccactctctg gcctttgtgg gcaccaaaag tggcaagctg aagaagtcct
1441tcggcacagg tccacaaggc ggaatcaccc aggagtggat tggagtggcg ggagacccac
1501ctggggcgaa cattgcttct caggaacaga tgctgtgtgt gtatcttcag tgctcaagtc
1561acaaagcaat atcagatcag agagtccagc ctctgctttg ttgcttccta aatgtacctg
1621ggaattcttc ctacccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
1681tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
1741caatcaacct ctggatta

Download FASTA (ORF) (Full)