Construct: ORF ccsbBroad304_15229

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018885.1_s304c1, BRDN0000459369
Derived from:
ccsbBroadEn_15229
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
IP6K3 (117283)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15229
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 117283 IP6K3 inositol hexakisphosphate k... NM_001142883.1 97.4% 36.9% (many diffs)
2 human 117283 IP6K3 inositol hexakisphosphate k... NM_054111.5 97.4% 36.9% (many diffs)
3 human 117283 IP6K3 inositol hexakisphosphate k... XM_005248842.3 97.4% 36.9% (many diffs)
4 human 117283 IP6K3 inositol hexakisphosphate k... XM_024446323.1 97.4% 36.9% (many diffs)
5 human 117283 IP6K3 inositol hexakisphosphate k... XM_024446324.1 97.4% 36.9% (many diffs)
6 human 117283 IP6K3 inositol hexakisphosphate k... XM_024446325.1 97.4% 36.9% (many diffs)
7 human 117283 IP6K3 inositol hexakisphosphate k... XM_005248843.4 66.7% 4.4% (many diffs)
8 human 117283 IP6K3 inositol hexakisphosphate k... XM_024446326.1 66.7% 4.4% (many diffs)
9 human 117283 IP6K3 inositol hexakisphosphate k... XM_024446327.1 66.7% 4.4% (many diffs)
10 human 117283 IP6K3 inositol hexakisphosphate k... XM_011514295.3 61.6% 56.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
618
ORF length:
549
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggttgtgcaa aacagcgcag acgccgggga catgagggca ggcgtgcagc
121tggagccctt cctgcaccag gtcggggggc acatgagcgt gatgaagtat gacgagcata
181cggtgtgcaa gcccctcgtc tcccgggagc agaggttcta tgaatccctg ccgctggcca
241tgaagcggtt caccccacag tacaaaggta ccgtcacagt gcacctctgg aaagacagca
301caggccatct cagcttggtt gccaacccag tgaaggagag ccaggagccc ttcaaggtct
361ccacagagtc ggcggcggtg gccatatggc agacgctcca gcagaccacc ggcagcaatg
421gcagcgactg cacccttgcc cagtggccgc atgcccagct ggcacgctca cccaaggaga
481gcccggccaa ggctcttctg aggtccgagc cccacctnan cantcccanc cttntcgntg
541gtngaaggac accaacggaa accaggttga gaggaagagc ttnaacccgt gggncnnnna
601atgccaccag ncccacntga ccccgcctgt gctcnnagta cccanagaac aagcgggcat
661cggttcttgt tgctggaaaa tgtagtgtca cagtacacgc atncctgtgt cctggatctg
721aagatgggga cccggcagca cggcgatgat gcatcggagg agaagaaggc ccgccacatg
781aggaagtgtg cgcagagcac ctcagcctgc ctgggtgtgc gcatctgcgg catgcaggtt
841tatcaaacag ataagnagta ctttctnnnn naagacaagt actatggnag aaaactctca
901gtggaggggt tcagacaagc cctctatcag ttcctacata atggaagcca cctccggagg
961gagctcctgg agcccatcct gcaccagctc cgggccctcc tctccatcat taggagccag
1021agttcatacc gcttctattc cagctctctc cttgtcatct atgatgggca ggaaccacca
1081gaaagagccc caggcagccc gcatcctcac gaggctcccc aggcagccca cggtagctct
1141cccggtggtc tcaccaaggt tgacatccgc atgattgact ttgctcatac cacatacaag
1201ggctactgga atgagcacac cacctacgat ggaccagacc ctggctatat ttttggcctg
1261gaaaacctca tcaggatcct gcaggatatc caagagggag aattgccaac tttcttgtac
1321aaagtggttg gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga
1381gctagcgcta accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)

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