Construct: ORF ccsbBroad304_15231

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018956.1_s304c1, BRDN0000459440
Derived from:
ccsbBroadEn_15231
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
LRRK2 (120892)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15231
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 120892 LRRK2 leucine rich repeat kinase 2 NM_198578.4 97.8% 1.4% (many diffs)
2 human 120892 LRRK2 leucine rich repeat kinase 2 XM_005268629.4 97.6% 1.5% (many diffs)
3 human 120892 LRRK2 leucine rich repeat kinase 2 XM_011537877.3 96.9% 1.5% (many diffs)
4 human 120892 LRRK2 leucine rich repeat kinase 2 XM_024448833.1 83.9% 1.4% (many diffs)
5 human 120892 LRRK2 leucine rich repeat kinase 2 XR_001748574.2 64.5% (many diffs)
6 human 120892 LRRK2 leucine rich repeat kinase 2 XM_011537881.3 61.9% 2.3% (many diffs)
7 human 120892 LRRK2 leucine rich repeat kinase 2 XM_017018787.1 59% 1.4% (many diffs)
8 human 120892 LRRK2 leucine rich repeat kinase 2 XM_017018786.2 58.5% 2.4% (many diffs)
9 human 120892 LRRK2 leucine rich repeat kinase 2 XM_017018788.2 50.2% .8% (many diffs)
10 human 120892 LRRK2 leucine rich repeat kinase 2 XM_011537882.3 48.6% 2.9% (many diffs)
11 human 120892 LRRK2 leucine rich repeat kinase 2 XM_017018789.2 48.4% 2.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
390
ORF length:
321
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggctagtggc agctgtcagg ggtgcgaaga ggacgagnaa acttctgaag
121aagttgatag tcaggctgaa caatgtccag gaaggaaaac agatagaaac gctggtccaa
181atcctggagg atctgctggt gttcacgtac tccgagcacg cctccaagtt atttcaaggc
241aaaaatatcc atgtgcctct gttgatcgtc ttggactcct atatgagagt cgcgagtgtg
301cagcaggtgg gttggtcact tctgtgcaaa ttaatagaag tctgtccagg tacaatgcaa
361agcttaatgg gaccccagga tgttggaaat gattgggaag tccttggtgt tcaccaattg
421attcttaaaa tgctaacagt tcataatgcc agtgtaaact tgtcagtgat tggactgaag
481accttagatc tcctcctaac ttcaggtaaa atcaccttgc tgatattgga tgaagaaagt
541gatattttca tgttaatttt tgatgccatg cactcatttc cagccaatga tgaagtccag
601aaacttggat gcaaagcttt acatgtgctg tttgagagag tctcagagga gcaactgact
661gaatttgttg agaacaaaga ttatatgata ttgttaagtg cgttaacaaa ttttaaagat
721gaagaggaaa ttgtgcttca tgtgctgcat tgtttacatt ccctagcgat tccttagata
781caatcttgct tgaccgtttg ggacatcaat ncttccacat gaanntgcaa aatttagaaa
841aacacattga agtgagaaaa gaattagctg aaaaaatgag acgaacatct gttgagttgc
901caactttctt gtacaaagtt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
961aacaggtcac tatcagtcaa aataaaatca ttattgccat ccagctagct cagtgctcag
1021ctgtttggcc ctcctcactg agactatttt cttaaatcaa gatttagagg aaaagaatga
1081gaatcaagag aatgatgatg agggggaaga agataaattg ttttggctgg aagcctgtta
1141caaagcatta acgtggcata gaaagaacaa gcacgtgcag gaggccgcat gctgggcact
1201aaataatctc cttatgtacc aaaacagttt acatgagaag attggagatg aagatggcca
1261tttcccagct catagggaag tgatgctctc catgctgatg cattcttcat caaaggaagt
1321tttccaggca tctgcgaatg cattgtcaac tctcttagaa caaaatgtta atttcagaaa
1381aatactgtta tcaaaaggaa tacacctgaa tgttttggag ttaatgcaga agcatataca
1441ttctcctgaa gtggctgaaa gtggctgtaa aatgctaaat catctttttg aaggaagcaa
1501cacttccctg gatataatgg cagcagtggt ccccaaaata ctaacagtta tgaaacgtca
1561tgagacatca ttaccagtgc agctggaggc gcttcgagct attttacatt ttatagtgcc
1621tggcatgcca gaagaatcca gggaggatac agaatttcat cataagctaa atatggttaa
1681aaaacagtgt ttcaagaatg atattcacaa actggtccta gcagctttga acaggttcat
1741tggaaatcct gggattcaga aatgtggatt aaaagtaatt tcttctattg tacattttcc
1801tgatgcatta gagatgttat ccctggaagg tgctatggat tcagtgcttc acacactgca
1861gatgtatcca gatgaccaag aaattcagtg tctgggttta agtcttatag gatacttgat
1921tacaaagaag aatgtgttca taggaactgg acatctgctg gcaaaaattc tggtttccag
1981cttataccga tttaaggatg ttgctgaaat acagactaaa ggatttcaga caatcttagc
2041aatcctcaaa ttgtcagcat ctttttctaa gctgctggtg catcattcat ttgacttagt
2101aatattccat caaatgtctt ccaatatcat ggaacaaaag gatcaacagt ttctaaacct
2161ctgttgcaag tgttttgcaa aagtagctat ggatgattac ttaaaaaatg tgatgctaga
2221gagagcgtgt gatcagaata acagcatcat ggttgaatgc ttgcttctat tgggagcaga
2281tgccaatcaa gcaaaggagg gatcttcttt aatttgtcag gtatgtgaga aagagagcag
2341tcccaaattg gtggaactct tactgaatag tggatctcgt gaacaagatg tacgaaaagc
2401gttgacgata agcattggga aaggtgacag ccagatcatc agcttgctct taaggaggct
2461ggccctggat gtggccaaca atagcatttg ccttggagga ttttgtatag gaaaagttga
2521accttcttgg cttggtcctt tatttccaga taagacttct aatttaagga aacaaacaaa
2581tatagcatct acactagcaa gaatggtgat cagatatcag atgaaaagtg ctgtggaaga
2641aggaacagcc tcaggcagcg atggaaattt ttctgaagat gtgctgtcta aatttgatga
2701atggaccttt attcctgact cttctatgga cagtgtgttt gctcaaagtg atgacctgga
2761tagtgaagga agtgaaggct catttcttgt gaaaaagaaa tctaattcaa ttagtgtagg
2821agaattttac cgagatgccg tattacagcg ttgctcacca aatttgcaaa gacattccaa
2881ttccttgggg cccatttttg atcatgaaga tttactgaag cgaaaaagaa aaatattatc
2941ttcagatgat tcactcaggt catcaaaact tcaatcccat atgaggcatt cagacagcat
3001ttcttctctg gcttctgaga gagaatatat tacatcacta gacctttcag caaatgaact
3061aagagatatt gatgccctaa gccagaaatg ctgtataagt gttcatttgg agcatcttga
3121aaagctggag cttcaccaga atgcactcac gagctttcca caacagctat gtgaaactct
3181gaagagtttg acacatttgg acttgcacag taataaattt acatcatttc cttcttattt
3241gttgaaaatg agttgtattg ctaatcttga tgtctctcga aatgacattg gaccctcagt
3301ggttttagat cctacagtga aatgtccaac tctgaaacag tttaacctgt catataacca
3361gctgtctttt gtacctgaga acctcactga tgtggtagag aaactggagc agctcatttt
3421agaaggaaat aaaatatcag ggatatgctc ccccttgaga ctgaaggaac tgaagatttt
3481aaaccttagt aagaaccaca tttcatccct atcagagaac tttcttgagg cttgtcctaa
3541agtggagagt ttcagtgcca gaatgaattt tcttgctgct atgcctttct tgcctccttc
3601tatgacaatc ctaaaattat ctcagaacaa attttcctgt attccagaag caattttaaa
3661tcttccacac ttgcggtctt tagatatgag cagcaatgat attcagtacc taccaggtcc
3721cgcacactgg aaatctttga acttaaggga actcttattt agccataatc agatcagcat
3781cttggacttg agtgaaaaag catatttatg gtctagagta gagaaactgc atctttctca
3841caataaactg aaagagattc ctcctgagat tggctgtctt gaaaatctga catctctgga
3901tgtcagttac aacttggaac taagatcctt tcccaatgaa atggggaaat taagcaaaat
3961atgggatctt cctttggatg aactgcatct taactttgat tttaaacata taggatgtaa
4021agccaaagac atcataaggt ttcttcaaca gcgattaaaa aaggctgtgc cttataaccg
4081aatgaaactt atgattgtgg gaaatactgg gagtggtaaa accaccttat tgcagcaatt
4141aatgaaaacc aagaaatcag atcttggaat gcaaagtgcc acagttggca tagatgtgaa
4201agactggcct atccaaataa gagacaaaag aaagagagat ctcgtcctaa atgtgtggga
4261ttttgcaggt cgtgaggaat tctatagtac tcatccccat tttatgacgc agcgagcatt
4321gtaccttgct gtctatgacc tcagcaaggg acaggctgaa gttgatgcca tgaagccttg
4381gctcttcaat ataaaggctc gcgcttcttc ttcccctgtg attctcgttg gcacacattt
4441ggatgtttct gatgagaagc aacgcaaagc ctgcatgagt aaaatcacca aggaactcct
4501gaataagcga gggttccctg ccatacgaga ttaccacttt gtgaatgcca ccgaggaatc
4561tgatgctttg gcaaaacttc ggaaaaccat cataaacgag agccttaatt tcaagatccg
4621agatcagctt gttgttggac agctgattcc agactgctat gtagaacttg aaaaaatcat
4681tttatcggag cgtaaaaatg tgccaattga atttcccgta attgaccgga aacgattatt
4741acaactagtg agagaaaatc agctgcagtt agatgaaaat gagcttcctc acgcagttca
4801ctttctaaat gaatcaggag tccttcttca ttttcaagac ccagcactgc agttaagtga
4861cttgtacttt gtggaaccca agtggctttg taaaatcatg gcacagattt tgacagtgaa
4921agtggaaggt tgtccaaaac accctaaggg aattatttcg cgtagagatg tggaaaaatt
4981tctttcaaag aaaaggaaat ttccaaagaa ctacatgaca cagtatttta agctcctaga
5041aaaattccag attgctttgc caataggaga agaatatttg ctggttccaa gcagtttgtc
5101tgaccacagg cctgtgatag agcttcccca ttgtgagaac tctgaaatta tcatccgact
5161atatgaaatg ccttattttc caatgggatt ttggtcaaga ttaatcaatc gattacttga
5221gatttcacct tacatgcttt cagggagaga acgagcactt cgcccaaaca gaatgtattg
5281gcgacaaggc atttacttaa attggtctcc tgaagcttat tgtctggtag gatctgaagt
5341cttagacaat catccagaga gtttcttaaa aattacagtt ccttcttgta gaaaaggctg
5401tattcttttg ggccaagttg tggaccacat tgattctctc atggaagaat ggtttcctgg
5461gttgctggag attgatattt gtggtgaagg agaaactctg ttgaagaaat gggcattata
5521tagttttaat gatggcgaag aacatcaaaa aatcttactt gatgacttga tgaagaaagc
5581agaggaagga gatctcttag taaatccaga tcaaccaagg ctcaccattc caatatctca
5641gattgcccct gacttgattt tggctgacct gcctagaaat attatgttga ataatgatga
5701gttggaattt gaacaagctc cagagtttct cctaggtgat ggcagttttg gatcagttta
5761ccgagcagcc tatgaaggag aagaagtggc tgtgaagatt tttaataaac atacatcact
5821caggctgtta agacaagagc ttgtggtgct ttgccacctc caccacccca gtttgatatc
5881tttgctggca gctgggattc gtccccggat gttggtgatg gagttagcct ccaagggttc
5941cttggatcgc ctgcttcagc aggacaaagc cagcctcact agaaccctac agcacaggat
6001tgcactccac gtagctgatg gtttgagata cctccactca gccatgatta tataccgaga
6061cctgaaaccc cacaatgtgc tgcttttcac actgtatccc aatgctgcca tcattgcaaa
6121gattgctgac tacggcattg ctcagtactg ctgtagaatg gggataaaaa catcagaggg
6181cacaccaggg tttcgtgcac ctgaagttgc cagaggaaat gtcatttata accaacaggc
6241tgatgtttat tcatttggtt tactactcta tgacattttg acaactggag gtagaatagt
6301agagggtttg aagtttccaa atgagtttga tgaattagaa atacaaggaa aattacctga
6361tccagttaaa gaatatggtt gtgccccatg gcctatggtt gaaaaattaa ttaaacagtg
6421tttgaaagaa aatcctcaag aaaggcctac ttctgcccag gtctttgaca ttttgaattc
6481agctgaatta gtctgtctga cgagacgcat tttattacct aaaaacgtaa ttgttgaatg
6541catggttgct acacatcaca acagcaggaa tgcaagcatt tggctgggct gtgggcacac
6601cgacagagga cagctctcat ttcttgactt aaatactgaa ggatacactt ctgaggaagt
6661tgctgatagt agaatattgt gcttagcctt ggtgcatctt cctgttgaaa aggaaagctg
6721gattgtgtct gggacacagt ctggtactct cctggtcatc aataccgaag atgggaaaaa
6781gagacatacc ctagaaaaga tgactgattc tgtcacttgt ttgtattgca attccttttc
6841caagcaaagc aaacaaaaaa attttctttt ggttggaacc gctgatggca agttagcaat
6901ttttgaagat aagactgtta agcttaaagg agctgctcct ttgaagatac taaatatagg
6961aaatgtcagt actccattga tgtgtttgag tgaatccaca aattcaacgg aaagaaatgt
7021aatgtgggga ggatgtggca caaagatttt ctccttttct aatgatttca ccattcagaa
7081actcattgag acaagaacaa gccaactgtt ttcttatgca gctttcagtg attccaacat
7141cataacagtg gtggtagaca ctgctctcta tattgctaag caaaatagcc ctgttgtgga
7201agtgtgggat aagaaaactg aaaaactctg tggactaata gactgcgtgc actttttaag
7261ggaggtaacg gtaaaagaaa acaaggaatc aaaacacaaa atgtcttatt ctgggagagt
7321gaaaaccctc tgccttcaga agaacactgc tctttggata ggaactggag gaggccatat
7381tttactcctg gatctttcaa ctcgtcgact tatacgtgta atttacaact tttgtaattc
7441ggtcagagtc atgatgacag cacagctagg aagccttaaa aatgtcatgc tggtattggg
7501ctacaaccgg aaaaatactg aaggtacaca aaagcagaaa gagatacaat cttgcttgac
7561cgtttgggac atcaatcttc cacatgaagt gcaaaattta gaaaaacaca ttgaagtgag
7621aaaagaatta gctgaaaaaa tgagacgaac atctgttgag ttgccaactt tcttgtacaa
7681agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt agtaatgagc
7741tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

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