Construct: ORF ccsbBroad304_15481

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004241.1_s304c1, BRDN0000401806
Derived from:
ccsbBroadEn_15481
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
INPP5D (3635)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15481
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3635 INPP5D inositol polyphosphate-5-ph... NM_005541.5 99.9% 100% 816G>A
2 human 3635 INPP5D inositol polyphosphate-5-ph... NM_001017915.3 99.8% 99.9% 348_350delAGT;819G>A
3 human 3635 INPP5D inositol polyphosphate-5-ph... XM_017004004.1 55.6% 55.6% 0_1ins1581
4 mouse 16331 Inpp5d inositol polyphosphate-5-ph... NM_001110192.2 84.3% 87.2% (many diffs)
5 mouse 16331 Inpp5d inositol polyphosphate-5-ph... NM_010566.3 84.2% 87.1% (many diffs)
6 mouse 16331 Inpp5d inositol polyphosphate-5-ph... XM_006529150.2 83.9% 86.8% (many diffs)
7 mouse 16331 Inpp5d inositol polyphosphate-5-ph... XM_006529149.2 83.9% 86.7% (many diffs)
8 mouse 16331 Inpp5d inositol polyphosphate-5-ph... NM_001110193.2 80.4% 83.1% (many diffs)
9 mouse 16331 Inpp5d inositol polyphosphate-5-ph... XM_006529151.2 80.1% 82.7% (many diffs)
10 mouse 16331 Inpp5d inositol polyphosphate-5-ph... XM_006529152.2 68.1% 69.4% (many diffs)
11 mouse 16331 Inpp5d inositol polyphosphate-5-ph... NR_122078.1 58.5% (many diffs)
12 mouse 16331 Inpp5d inositol polyphosphate-5-ph... XR_001782395.1 57.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3633
ORF length:
3564
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggtcccctgc tggaaccatg gcaacatcac ccgctccaag gcggaggagc
121tgctttccag gacaggcaag gacgggagct tcctcgtgcg tgccagcgag tccatctccc
181gggcatacgc gctctgcgtg ctgtatcgga attgcgttta cacttacaga attctgccca
241atgaagatga taaattcact gttcaggcat ccgaaggcgt ctccatgagg ttcttcacca
301agctggacca gctcatcgag ttttacaaga aggaaaacat ggggctggtg acccatctgc
361aataccctgt gccgctggag gaagaggaca caggcgacga ccctgaggag gacacagaaa
421gtgtcgtgtc tccacccgag ctgcccccaa gaaacatccc gctgactgcc agctcctgtg
481aggccaagga ggttcctttt tcaaacgaga atccccgagc gaccgagacc agccggccga
541gcctctccga gacattgttc cagcgactgc aaagcatgga caccagtggg cttccagaag
601agcatcttaa ggccatccaa gattatttaa gcactcagct cgcccaggac tctgaatttg
661tgaagacagg gtccagcagt cttcctcacc tgaagaaact gaccacactg ctctgcaagg
721agctctatgg agaagtcatc cggaccctcc catccctgga gtctctgcag aggttatttg
781accagcagct ctccccgggc ctccgtccac gtcctcaggt tcctggtgag gccaatccca
841tcaacatggt gtccaagctc agccaactga caagcctgtt gtcatccatt gaagacaagg
901tcaaggcctt gctgcacgag ggtcctgagt ctccgcaccg gccctccctt atccctccag
961tcacctttga ggtgaaggca gagtctctgg ggattcctca gaaaatgcag ctcaaagtcg
1021acgttgagtc tgggaaactg atcattaaga agtccaagga tggttctgag gacaagttct
1081acagccacaa gaaaatcctg cagctcatta agtcacagaa atttctgaat aagttggtga
1141tcttggtgga aacagagaag gagaagatcc tgcggaagga atatgttttt gctgactcca
1201aaaagagaga aggcttctgc cagctcctgc agcagatgaa gaacaagcac tcagagcagc
1261cggagcccga catgatcacc atcttcatcg gcacctggaa catgggtaac gccccccctc
1321ccaagaagat cacgtcctgg tttctctcca aggggcaggg aaagacgcgg gacgactctg
1381cggactacat cccccatgac atttacgtga tcggcaccca agaggacccc ctgagtgaga
1441aggagtggct ggagatcctc aaacactccc tgcaagaaat caccagtgtg acttttaaaa
1501cagtcgccat ccacacgctc tggaacatcc gcatcgtggt gctggccaag cctgagcacg
1561agaaccggat cagccacatc tgtactgaca acgtgaagac aggcattgca aacacactgg
1621ggaacaaggg agccgtgggg gtgtcgttca tgttcaatgg aacctcctta gggttcgtca
1681acagccactt gacttcagga agtgaaaaga aactcaggcg aaaccaaaac tatatgaaca
1741ttctccggtt cctggccctg ggcgacaaga agctgagtcc ctttaacatc actcaccgct
1801tcacgcacct cttctggttt ggggatctta actaccgtgt ggatctgcct acctgggagg
1861cagaaaccat catccagaaa atcaagcagc agcagtacgc agacctcctg tcccacgacc
1921agctgctcac agagaggagg gagcagaagg tcttcctaca cttcgaggag gaagaaatca
1981cgtttgcccc aacctaccgt tttgagagac tgactcggga caaatacgcc tacaccaagc
2041agaaagcgac agggatgaag tacaacttgc cttcctggtg tgaccgagtc ctctggaagt
2101cttatcccct ggtgcacgtg gtgtgtcagt cttatggcag taccagcgac atcatgacga
2161gtgaccacag ccctgtcttt gccacatttg aggcaggagt cacttcccag tttgtctcca
2221agaacggtcc cgggactgtt gacagccaag gacagattga gtttctcagg tgctatgcca
2281cattgaagac caagtcccag accaaattct acctggagtt ccactcgagc tgcttggaga
2341gttttgtcaa gagtcaggaa ggagaaaatg aagaaggaag tgagggggag ctggtggtga
2401agtttggtga gactcttcca aagctgaagc ccattatctc tgaccctgag tacctgctag
2461accagcacat cctcatcagc atcaagtcct ctgacagcga cgaatcctat ggcgagggct
2521gcattgccct tcggttagag gccacagaaa cgcagctgcc catctacacg cctctcaccc
2581accatgggga gttgacaggc cacttccagg gggagatcaa gctgcagacc tctcagggca
2641agacgaggga gaagctctat gactttgtga agacggagcg tgatgaatcc agtgggccaa
2701agaccctgaa gagcctcacc agccacgacc ccatgaagca gtgggaagtc actagcaggg
2761cccctccgtg cagtggctcc agcatcactg aaatcatcaa ccccaactac atgggagtgg
2821ggccctttgg gccaccaatg cccctgcacg tgaagcagac cttgtcccct gaccagcagc
2881ccacagcctg gagctacgac cagccgccca aggactcccc gctggggccc tgcaggggag
2941aaagtcctcc gacacctccc ggccagccgc ccatatcacc caagaagttt ttaccctcaa
3001cagcaaaccg gggtctccct cccaggacac aggagtcaag gcccagtgac ctggggaaga
3061acgcagggga cacgctgcct caggaggacc tgccgctgac gaagcccgag atgtttgaga
3121accccctgta tgggtccctg agttccttcc ctaagcctgc tcccaggaag gaccaggaat
3181cccccaaaat gccgcggaag gaacccccgc cctgcccgga acccggcatc ttgtcgccca
3241gcatcgtgct caccaaagcc caggaggctg atcgcggcga ggggcccggc aagcaggtgc
3301ccgcgccccg gctgcgctcc ttcacgtgct catcctctgc cgagggcagg gcggccggcg
3361gggacaagag ccaagggaag cccaagaccc cggtcagctc ccaggccccg gtgccggcca
3421agaggcccat caagccttcc agatcggaaa tcaaccagca gaccccgccc accccgacgc
3481cgcggccgcc gctgccagtc aagagcccgg cggtgctgca cctccagcac tccaagggcc
3541gcgactaccg cgacaacacc gagctcccgc atcacggcaa gcaccggccg gaggaggggc
3601caccagggcc tctaggcagg actgccatgc agtnnccaac tttcttgtac aaagtggttg
3661gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
3721accggtggcg cgttaagtcg acaatcaacc tctggatta

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