Construct: ORF ccsbBroad304_15510

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018556.1_s304c1, BRDN0000399478
Derived from:
ccsbBroadEn_15510
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NPM1 (4869)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15510
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4869 NPM1 nucleophosmin 1 NM_001355006.1 99.8% 99.6% 238A>G
2 human 4869 NPM1 nucleophosmin 1 NM_002520.6 99.8% 99.6% 238A>G
3 human 4869 NPM1 nucleophosmin 1 NM_199185.3 90% 89.7% 238A>G;579_580ins87
4 human 4869 NPM1 nucleophosmin 1 NM_001037738.3 87.7% 87% (many diffs)
5 human 4869 NPM1 nucleophosmin 1 NM_001355007.1 78.1% 77.8% 0_1ins192;46A>G
6 human 4869 NPM1 nucleophosmin 1 NM_001355009.2 77.8% 77.2% (many diffs)
7 human 4869 NPM1 nucleophosmin 1 NM_001355010.1 56.8% 56.8% 57_58ins294;285_286ins87
8 human 4869 NPM1 nucleophosmin 1 NR_149149.1 51.9% (many diffs)
9 human 29121 CLEC2D C-type lectin domain family... NR_036693.3 15.4% (many diffs)
10 mouse 18148 Npm1 nucleophosmin 1 NM_008722.3 90.1% 94.5% (many diffs)
11 mouse 18148 Npm1 nucleophosmin 1 NM_001252260.1 86.2% 90.1% (many diffs)
12 mouse 18148 Npm1 nucleophosmin 1 NM_001252261.1 78.7% 82% (many diffs)
13 mouse 102639044 LOC102639044 nucleophosmin pseudogene XR_389514.3 55.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
948
ORF length:
882
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga agattcgatg gacatggaca tgagccccct gaggccccag aactatcttt
121tcggttgtga actaaaggcc gacaaagatt atcactttaa ggtggataat gatgaaaatg
181agcaccagtt atctttaaga acggtcagtt taggggctgg tgcaaaggat gagttgcaca
241ttgttgaagc agaggcaatg aattacgaag gcagtccaat taaagtaaca ctggcaactt
301tggaaatgtc tgtacagcca acggtttccc ttgggggctt tgaaataaca ccaccagtgg
361tcttaaggtt gaagtgtggt tcagggccag tgcatattag tggacagcac ttagtagctg
421tggaggaaga tgcagagtca gaagatgaag aggaggagga tgtgaaactc ttaagtatat
481ctggaaagcg gtctgcccct ggaggtggta gcaaggttcc acagaaaaaa gtaaaacttg
541ctgctgatga agatgatgac gatgatgatg aagaggatga tgatgaagat gatgatgatg
601atgattttga tgatgaggaa gctgaagaaa aagcgccagt gaagaaatct atacgagata
661ctccagccaa aaatgcacaa aagtcaaatc agaatggaaa agactcaaaa ccatcatcaa
721caccaagatc aaaaggacaa gaatccttca agaaacagga aaaaactcct aaaacaccaa
781aaggacctag ttctgtagaa gacattaaag caaaaatgca agcaagtata gaaaaaggtg
841gttctcttcc caaagtggaa gccaaattca tcaattatgt gaagaattgc ttccggatga
901ctgaccaaga ggctattcaa gatctctggc agtggaggaa gtctctttnn ccaactttct
961tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt
1021aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)