Construct: ORF ccsbBroad304_15594

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018289.1_s304c1, BRDN0000407895
Derived from:
ccsbBroadEn_15594
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC6A13 (6540)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15594
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6540 SLC6A13 solute carrier family 6 mem... NM_001243392.2 100% 100%
2 human 6540 SLC6A13 solute carrier family 6 mem... XM_017019846.1 25.3% 21.4% (many diffs)
3 human 6540 SLC6A13 solute carrier family 6 mem... XM_017019847.1 25.3% 21.4% (many diffs)
4 human 6540 SLC6A13 solute carrier family 6 mem... XM_017019844.1 21% 17.8% (many diffs)
5 human 6540 SLC6A13 solute carrier family 6 mem... NM_001190997.2 17.5% 14.6% (many diffs)
6 human 6540 SLC6A13 solute carrier family 6 mem... XR_001748849.1 15.4% (many diffs)
7 human 6540 SLC6A13 solute carrier family 6 mem... NM_016615.5 13.8% 11.8% (many diffs)
8 human 6540 SLC6A13 solute carrier family 6 mem... XR_002957372.1 11% (many diffs)
9 mouse 14412 Slc6a13 solute carrier family 6 (ne... NM_144512.2 14% 10.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
357
ORF length:
291
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga tagcagggtc tcaggcacaa ccagtaatgg agagacaaaa ccagtgtatc
121cagtcatgga aaagaaggag gaagatggca ccctggagcg ggggcactgg aacaacaaga
181tggagtttgt gctgtcagtg gctggggaga tcattggctt aggcaacgtc tggaggtttc
241cctatctctg ctacaaaaat gggggaggtg agatgagagc ccttgtgcca ccccacccac
301tcctggaagg aggatacttc catctcctgc acttacggcc cctctgggga gtcccatnnc
361caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
421ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
481tta

Download FASTA (ORF) (Full)