Construct: ORF ccsbBroad304_15606

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018062.1_s304c1, BRDN0000404391
Derived from:
ccsbBroadEn_15606
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TBCD (6904)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15606
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6904 TBCD tubulin folding cofactor D XM_005256404.4 98.7% 98.5% (many diffs)
2 human 6904 TBCD tubulin folding cofactor D XM_006722292.3 98.7% 98.5% (many diffs)
3 human 6904 TBCD tubulin folding cofactor D XM_011523600.3 98.7% 98.5% (many diffs)
4 human 6904 TBCD tubulin folding cofactor D XM_017024990.2 98.7% 98.5% (many diffs)
5 human 6904 TBCD tubulin folding cofactor D XM_024450899.1 98.7% 98.5% (many diffs)
6 human 6904 TBCD tubulin folding cofactor D XM_024450900.1 98.7% 98.5% (many diffs)
7 human 6904 TBCD tubulin folding cofactor D XM_024450901.1 98.7% 98.5% (many diffs)
8 human 6904 TBCD tubulin folding cofactor D XM_024450902.1 98.7% 98.5% (many diffs)
9 human 6904 TBCD tubulin folding cofactor D XM_017024989.1 96.2% 96.1% (many diffs)
10 human 6904 TBCD tubulin folding cofactor D XM_011523599.2 92% 91.8% (many diffs)
11 human 6904 TBCD tubulin folding cofactor D XM_011523598.1 91.7% 91.5% (many diffs)
12 human 6904 TBCD tubulin folding cofactor D XM_011523597.2 91.6% 91.4% (many diffs)
13 human 6904 TBCD tubulin folding cofactor D XM_011523595.3 82.1% 82% (many diffs)
14 human 6904 TBCD tubulin folding cofactor D XM_006722291.4 81.8% 81.7% (many diffs)
15 human 6904 TBCD tubulin folding cofactor D XM_005256399.5 81.4% 81.2% (many diffs)
16 human 6904 TBCD tubulin folding cofactor D XM_011523594.2 80.9% 80.8% (many diffs)
17 human 6904 TBCD tubulin folding cofactor D XM_011523593.2 66% 65.9% (many diffs)
18 human 6904 TBCD tubulin folding cofactor D XM_011523591.2 58% 57.9% (many diffs)
19 human 6904 TBCD tubulin folding cofactor D XM_011523589.2 57.7% 57.6% (many diffs)
20 human 6904 TBCD tubulin folding cofactor D XM_017024987.1 55% 55% (many diffs)
21 human 6904 TBCD tubulin folding cofactor D XM_011523590.1 53.9% 51.4% (many diffs)
22 human 6904 TBCD tubulin folding cofactor D XM_006722290.2 53.1% 52.5% (many diffs)
23 human 6904 TBCD tubulin folding cofactor D XM_005256396.4 52.9% 52.8% (many diffs)
24 human 6904 TBCD tubulin folding cofactor D NM_005993.5 52.1% 52% (many diffs)
25 human 6904 TBCD tubulin folding cofactor D XR_001752597.1 47.9% (many diffs)
26 human 6904 TBCD tubulin folding cofactor D XR_001752599.1 44.5% (many diffs)
27 human 6904 TBCD tubulin folding cofactor D XR_001752598.1 43.2% (many diffs)
28 human 6904 TBCD tubulin folding cofactor D XR_430033.2 40.3% (many diffs)
29 human 6904 TBCD tubulin folding cofactor D XR_001752600.1 32.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1935
ORF length:
1869
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa gatcagccac tgggatgggg tcatccgaga gttggctgcg agggcgctgc
121acaacctggc ccagcaggca cccgagttca gcgccacgca agtcttcccg aggctgctgt
181ccatgacact gagtccagat cttcacacga ggcatgggtc gattctcgcc tgcgcagaag
241ttgcttacgc cttgtacaaa cttgcagccc aagagaacag gcccgtcacg gaccatctgg
301acgagcaggc agtgcagggc ctgaagcaga ttcaccagca gctctatgat cgtcagttat
361acaggggtct gggaggacag ctcatgagac aagcagtgtg tgttttaata gaaaagttgt
421cactttccaa aatgcccttt agaggtgaca ccgtaattga tggttggcaa tggctgataa
481atgacacttt gagacatctc catctcatct caagtcactc ccgccagcag atgaaggatg
541cagcagtctc ggccctggct gctctatgca gtgaatatta catgaaggag ccgggggagg
601cagatcccgc aattcaggag gagctgatca cgcagtacct ggctgagctt cggaaccccg
661aggagatgac tcgctgtggc ttctcgttgg ccttgggcgc ccttccaggc ttccttctga
721aaggccggct ccagcaggtt ctcacaggtt taagagcagt tacccacact tcccccgagg
781acgtaagttt tgctgagtcc aggagagacg gcttgaaggc cattgcgagg atttgccaga
841ctgttggtgt gaaagcagga gccccagacg aagctgtgtg cggagagaat gtttcccaga
901tttactgtgc gctgctgggc tgcatggacg actacaccac ggacagcaga ggggacgtgg
961gcacctgggt ccgcaaggcc gccatgacca gtctgatgga tctgacactt ctgctggctc
1021ggagccagcc tgagctgatc gaggcccata cctgtgagcg catcatgtgc tgtgtggccc
1081agcaggccag tgagaagatt gaccgtttcc gtgctcacgc cgccagcgtg ttcctgacgc
1141tcctgcactt tgacagccct cccatccccc acgtgcccca ccgaggagaa ctggaaaagc
1201tgtttcccag gtccgacgtg gcctccgtga actggagtgc accttcccag gccttcccac
1261gcatcaccca gctccttggg ctgcccacct accgctacca cgtcctgctg gggctagtcg
1321tgtccctggg cggcttgacg gagtcgacga tccggcactc cacccagagc ctctttgagt
1381acatgaaggg cattcagagc gacccgcagg ccctgggcag cttcagcggg acccttctgc
1441agatctttga ggacaacctt ctgaatgaga gggtgtccgt gccgctgctg aagacgctgg
1501accacgtgct cacccacggc tgcttcgaca tcttcaccac ggaggaggac cacccctttg
1561ctgtgaagtt gcttgcgctc tgtaagaaag aaatcaagaa ttcaaaagat atccagaagc
1621tcctgtcagg catcgcagtg ttctgcggga tggtgcagtt ccccggcgac gtgaggaggc
1681aggccctcct gcagctgtgt ctgctcctct gccaccgttt cccgctgatc cggaagacca
1741cggccagcca ggtgtacgag acattgctca cctacagtga cgtcgtgggc gcggatgtgc
1801tggacgaggt ggtgactgtg ctcagtgaca ctgcgtggga cgcggagctt gcagtggtga
1861gagagcagcg caaccgtctg tgtgaccttc tgggcgtacc caggccccag ctggtgcccc
1921agcctggtgc ctgctnncca actttcttgt acaaagtggt tggtaagcct atccctaacc
1981ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
2041cgacaatcaa cctctggatt a

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