Construct: ORF ccsbBroad304_15678

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004035.1_s304c1, BRDN0000400025
Derived from:
ccsbBroadEn_15678
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATG13 (9776)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15678
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9776 ATG13 autophagy related 13 NM_001346355.1 85.5% 81.5% (many diffs)
2 human 9776 ATG13 autophagy related 13 NM_001346356.1 85.5% 81.5% (many diffs)
3 human 9776 ATG13 autophagy related 13 NM_001205121.1 83% 79.9% (many diffs)
4 human 9776 ATG13 autophagy related 13 NM_001346342.1 83% 79.9% (many diffs)
5 human 9776 ATG13 autophagy related 13 NM_001346344.1 83% 79.9% (many diffs)
6 human 9776 ATG13 autophagy related 13 NM_001346346.1 83% 79.9% (many diffs)
7 human 9776 ATG13 autophagy related 13 NM_001346348.1 83% 79.9% (many diffs)
8 human 9776 ATG13 autophagy related 13 NM_001346349.1 83% 79.9% (many diffs)
9 human 9776 ATG13 autophagy related 13 NM_001346350.1 83% 79.9% (many diffs)
10 human 9776 ATG13 autophagy related 13 NM_001346351.1 83% 79.9% (many diffs)
11 human 9776 ATG13 autophagy related 13 NM_001346352.1 83% 79.9% (many diffs)
12 human 9776 ATG13 autophagy related 13 NM_001346353.1 83% 79.9% (many diffs)
13 human 9776 ATG13 autophagy related 13 NM_001346354.1 83% 79.9% (many diffs)
14 human 9776 ATG13 autophagy related 13 NM_014741.4 83% 79.9% (many diffs)
15 human 9776 ATG13 autophagy related 13 NM_001346338.1 79.2% 75.5% (many diffs)
16 human 9776 ATG13 autophagy related 13 NM_001346340.1 79.2% 75.5% (many diffs)
17 human 9776 ATG13 autophagy related 13 NM_001346333.1 78.5% 75.6% (many diffs)
18 human 9776 ATG13 autophagy related 13 NM_001346334.1 78.5% 75.6% (many diffs)
19 human 9776 ATG13 autophagy related 13 NM_001346335.1 78.5% 75.6% (many diffs)
20 human 9776 ATG13 autophagy related 13 NM_001346336.1 78.5% 75.6% (many diffs)
21 human 9776 ATG13 autophagy related 13 NM_001346337.1 78.5% 75.6% (many diffs)
22 human 9776 ATG13 autophagy related 13 XM_011520502.2 78.5% 75.6% (many diffs)
23 human 9776 ATG13 autophagy related 13 NM_001142673.2 77.1% 74.3% (many diffs)
24 human 9776 ATG13 autophagy related 13 NM_001205120.1 77.1% 74.3% (many diffs)
25 human 9776 ATG13 autophagy related 13 NM_001346319.1 77.1% 74.3% (many diffs)
26 human 9776 ATG13 autophagy related 13 NM_001346320.1 77.1% 74.3% (many diffs)
27 human 9776 ATG13 autophagy related 13 NM_001346321.1 77.1% 74.3% (many diffs)
28 human 9776 ATG13 autophagy related 13 NM_001346322.1 77.1% 74.3% (many diffs)
29 human 9776 ATG13 autophagy related 13 NM_001346323.1 77.1% 74.3% (many diffs)
30 human 9776 ATG13 autophagy related 13 NM_001346324.1 77.1% 74.3% (many diffs)
31 human 9776 ATG13 autophagy related 13 NM_001346325.1 77.1% 74.3% (many diffs)
32 human 9776 ATG13 autophagy related 13 NM_001346326.1 77.1% 74.3% (many diffs)
33 human 9776 ATG13 autophagy related 13 NM_001346327.1 77.1% 74.3% (many diffs)
34 human 9776 ATG13 autophagy related 13 NM_001346328.1 77.1% 74.3% (many diffs)
35 human 9776 ATG13 autophagy related 13 NM_001346329.1 77.1% 74.3% (many diffs)
36 human 9776 ATG13 autophagy related 13 NM_001346330.1 77.1% 74.3% (many diffs)
37 human 9776 ATG13 autophagy related 13 NM_001346331.1 77.1% 74.3% (many diffs)
38 human 9776 ATG13 autophagy related 13 NM_001346332.1 77.1% 74.3% (many diffs)
39 human 9776 ATG13 autophagy related 13 XM_017018603.2 77.1% 74.3% (many diffs)
40 human 9776 ATG13 autophagy related 13 XM_017018607.1 77.1% 74.3% (many diffs)
41 human 9776 ATG13 autophagy related 13 NM_001346317.1 73.7% 71% (many diffs)
42 human 9776 ATG13 autophagy related 13 NM_001346318.1 73.7% 71% (many diffs)
43 human 9776 ATG13 autophagy related 13 XM_011520500.2 73.7% 71% (many diffs)
44 human 9776 ATG13 autophagy related 13 NM_001205119.1 72.5% 69.9% (many diffs)
45 human 9776 ATG13 autophagy related 13 NM_001346311.1 72.5% 69.9% (many diffs)
46 human 9776 ATG13 autophagy related 13 NM_001346312.1 72.5% 69.9% (many diffs)
47 human 9776 ATG13 autophagy related 13 NM_001346313.1 72.5% 69.9% (many diffs)
48 human 9776 ATG13 autophagy related 13 NM_001346314.1 72.5% 69.9% (many diffs)
49 human 9776 ATG13 autophagy related 13 NM_001346315.1 72.5% 69.9% (many diffs)
50 human 9776 ATG13 autophagy related 13 NM_001346316.1 72.5% 69.9% (many diffs)
51 human 9776 ATG13 autophagy related 13 XM_005253265.3 72.5% 69.9% (many diffs)
52 human 9776 ATG13 autophagy related 13 XM_005253266.3 72.5% 69.9% (many diffs)
53 human 9776 ATG13 autophagy related 13 XM_005253268.2 72.5% 69.9% (many diffs)
54 human 9776 ATG13 autophagy related 13 XM_006718396.3 72.5% 69.9% (many diffs)
55 human 9776 ATG13 autophagy related 13 XM_011520493.2 72.5% 69.9% (many diffs)
56 human 9776 ATG13 autophagy related 13 XM_011520496.3 72.5% 69.9% (many diffs)
57 human 9776 ATG13 autophagy related 13 XM_011520499.3 72.5% 69.9% (many diffs)
58 human 9776 ATG13 autophagy related 13 XM_017018599.2 72.5% 69.9% (many diffs)
59 human 9776 ATG13 autophagy related 13 NM_001205122.1 66.6% 63.8% (many diffs)
60 human 9776 ATG13 autophagy related 13 NM_001346360.1 42.5% 40% (many diffs)
61 human 9776 ATG13 autophagy related 13 XM_024448781.1 42.5% 40% (many diffs)
62 human 9776 ATG13 autophagy related 13 NM_001346357.1 39.4% 37.2% (many diffs)
63 human 9776 ATG13 autophagy related 13 NM_001346358.1 39.4% 37.2% (many diffs)
64 human 9776 ATG13 autophagy related 13 NM_001346359.1 39.4% 37.2% (many diffs)
65 human 9776 ATG13 autophagy related 13 XM_017018618.2 37.1% 35% (many diffs)
66 human 9776 ATG13 autophagy related 13 NR_144422.1 19.8% (many diffs)
67 human 9776 ATG13 autophagy related 13 NR_144423.1 19.6% (many diffs)
68 human 9776 ATG13 autophagy related 13 NR_144424.1 18.2% (many diffs)
69 mouse 51897 Atg13 autophagy related 13 XM_006499892.2 75.3% 69.9% (many diffs)
70 mouse 51897 Atg13 autophagy related 13 NM_145528.3 73.7% 74.8% (many diffs)
71 mouse 51897 Atg13 autophagy related 13 XM_017319122.1 69.7% 65% (many diffs)
72 mouse 51897 Atg13 autophagy related 13 XM_006499891.3 69.6% 70.7% (many diffs)
73 mouse 51897 Atg13 autophagy related 13 XM_006499890.3 68.4% 69.5% (many diffs)
74 mouse 51897 Atg13 autophagy related 13 XM_006499888.2 65.4% 66.5% (many diffs)
75 mouse 51897 Atg13 autophagy related 13 XM_006499889.3 65.3% 61.1% (many diffs)
76 mouse 51897 Atg13 autophagy related 13 XM_006499887.2 64.3% 65.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1281
ORF length:
1215
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga aactgatctc aattcccagg acagaaagga cctggacaag tttattaaat
121tttttgccct caagactgtc caagtgattg tccaggctcg gcttggtgaa aagatttgca
181ctcgttcatc atcttctcca acgggttcag attggttcaa cttagcaatc aaagacatcc
241cagaggttac acatgaagca aagaaggcac tggcaggaca gctgcctgca gtcgggaggt
301ccatgtgtgt ggagatttca cttaagactt ctgagggaga ttccatggag ctggaaatat
361ggtgtcttga aatgaatgaa aagtgtgata aagaaatcaa agtttcctac acggtgtaca
421acagactgtc attgctgctg aagtcccttc ttgctataac tagggtgaca ccagcctata
481ggctctccag gaaacaaggg catgaatatg tcatattata caggatatat tttggagaag
541ttcagctgag tggcttagga gaaggcttcc agacagttcg tgttgggaca gtgggcaccc
601ctgtgggcac catcactctt tcttgtgctt acagaattaa cttggcattc atgtctacca
661ggcaatttga gaggacccca cctatcatgg ggattattat tgatcacttt gtggaccgtc
721cctatcccag ctcctctccc atgcacccct gcaattacag aactgctggt gaggacactg
781gagtaatata cccgtctgta gaagactctc aagaagtgtg taccacctct ttttccacct
841ccccaccatc ccagctgatg gttcctggga aggaaggtgg ggtacccctt gctcccaacc
901agcctgtcca tggtacccag gctgaccagg agagactggc aacctgcacc ccttctgaca
961gaacccactg tgctgccaca ccctccagta gtgaggatac tgaaaccgta tcaaacagca
1021gtgagggacg ggcctcccct cacgatgtct tggagaccat ctttgtccga aaagtggggg
1081cttttgtcaa caaacccatt aaccaggtga ccctgacgag tttggatata ccctttgcca
1141tgtttgctcc caagaatttg gagctggagg ataccgatcc aatggtgaat cctccagatt
1201ccccagagac tgaatctcct ctccagggca gcctgccttg cagctggccc cttccctgcc
1261tgctgtcacc atccactgtt tnnccaactt tcttgtacaa agtggttggt aagcctatcc
1321ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
1381ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)