Construct: ORF ccsbBroad304_15684
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016379.1_s304c1, BRDN0000405013
- Derived from:
- ccsbBroadEn_15684
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARHGAP44 (9912)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15684
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9912 | ARHGAP44 | Rho GTPase activating prote... | NM_001321168.2 | 19.1% | 19.1% | 1_1377del |
| 2 | human | 9912 | ARHGAP44 | Rho GTPase activating prote... | XM_005256891.2 | 14.7% | 14.4% | (many diffs) |
| 3 | human | 9912 | ARHGAP44 | Rho GTPase activating prote... | NM_001321164.2 | 14.1% | 14.1% | 1_1977del |
| 4 | human | 9912 | ARHGAP44 | Rho GTPase activating prote... | NM_001321167.2 | 14% | 14% | 1_1995del |
| 5 | human | 9912 | ARHGAP44 | Rho GTPase activating prote... | NM_001321166.2 | 13.3% | 13.1% | (many diffs) |
| 6 | human | 9912 | ARHGAP44 | Rho GTPase activating prote... | NM_014859.6 | 13.2% | 13% | (many diffs) |
| 7 | human | 9912 | ARHGAP44 | Rho GTPase activating prote... | NR_135569.2 | 8.4% | (many diffs) | |
| 8 | mouse | 216831 | Arhgap44 | Rho GTPase activating prote... | XM_017314452.1 | 13.7% | 14.2% | (many diffs) |
| 9 | mouse | 216831 | Arhgap44 | Rho GTPase activating prote... | XM_006532874.3 | 13% | 13.3% | (many diffs) |
| 10 | mouse | 216831 | Arhgap44 | Rho GTPase activating prote... | XM_006532873.3 | 12.8% | 13.1% | (many diffs) |
| 11 | mouse | 216831 | Arhgap44 | Rho GTPase activating prote... | NM_175003.3 | 12.3% | 12.8% | (many diffs) |
| 12 | mouse | 216831 | Arhgap44 | Rho GTPase activating prote... | XM_006532872.3 | 12.2% | 12.7% | (many diffs) |
| 13 | mouse | 216831 | Arhgap44 | Rho GTPase activating prote... | NM_001099288.1 | 11.6% | 11.8% | (many diffs) |
| 14 | mouse | 216831 | Arhgap44 | Rho GTPase activating prote... | XM_006532871.3 | 11.5% | 11.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 393
- ORF length:
- 327
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc agaccagtcc gctggccagc cgtccccagt cagcctgtcc cccaccccgc 121 ccagcacccc gtcaccctat ggactgagct accctcaggg gtactccttg gcctcgggcc 181 agctctcccc agctgcagct cctcccctgg cctctccttc tgtctttaca agcactttga 241 gcaaatcgcg gcccactcct aagccgcgac agagacctac tctgccgcct cctcagcctc 301 ccacagtaaa cctctcggcc tctagtccac agtccacgga ggcccccatg ctagatggca 361 tgtcccctgg ggaaagcatg tctacagctg tgtnnccaac tttcttgtac aaagtggttg 421 gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta 481 accggtggcg cgttaagtcg acaatcaacc tctggatta