Construct: ORF ccsbBroad304_15841
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006947.1_s304c1, BRDN0000403348
- Derived from:
- ccsbBroadEn_15841
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- IP6K2 (51447)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15841
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NM_001005910.3 | 100% | 100% | |
| 2 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NM_001005911.3 | 100% | 100% | |
| 3 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NM_001146178.2 | 76.3% | 68.9% | (many diffs) |
| 4 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NM_001146179.3 | 76.3% | 68.9% | (many diffs) |
| 5 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_011533822.1 | 76.3% | 68.9% | (many diffs) |
| 6 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_011533823.1 | 76.3% | 68.9% | (many diffs) |
| 7 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006591.1 | 62.5% | 62.5% | 1_174del |
| 8 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006589.1 | 62.1% | 62.1% | 1_177del |
| 9 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006590.2 | 62.1% | 62.1% | 1_177del |
| 10 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006592.1 | 48.5% | 43.8% | (many diffs) |
| 11 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006593.1 | 48.5% | 43.8% | (many diffs) |
| 12 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006588.1 | 46.2% | 42.1% | (many diffs) |
| 13 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NM_001190316.1 | 45.9% | 41.8% | (many diffs) |
| 14 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NM_001190317.1 | 45.2% | 41.2% | (many diffs) |
| 15 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NR_027438.3 | 22% | 1_192del;393_523del;615_1318del | |
| 16 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NR_027437.3 | 22% | 1_195del;396_526del;618_1321del | |
| 17 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NM_001005909.2 | 19.9% | 16.5% | (many diffs) |
| 18 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | NM_016291.4 | 19.9% | 16.5% | (many diffs) |
| 19 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006583.2 | 19.9% | 16.5% | (many diffs) |
| 20 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006584.2 | 19.9% | 16.5% | (many diffs) |
| 21 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_017006585.2 | 19.9% | 16.5% | (many diffs) |
| 22 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_024453568.1 | 19.9% | 16.5% | (many diffs) |
| 23 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_024453569.1 | 19.9% | 16.5% | (many diffs) |
| 24 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_024453570.1 | 19.9% | 16.5% | (many diffs) |
| 25 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_024453571.1 | 19.9% | 16.5% | (many diffs) |
| 26 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_006713202.2 | 17.7% | 14.7% | (many diffs) |
| 27 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_011533816.2 | 17.7% | 14.7% | (many diffs) |
| 28 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_006713201.2 | 17.7% | 14.6% | (many diffs) |
| 29 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_006713200.1 | 17.6% | 14.6% | (many diffs) |
| 30 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XM_006713199.4 | 17.5% | 14.5% | (many diffs) |
| 31 | human | 51447 | IP6K2 | inositol hexakisphosphate k... | XR_001740172.1 | 16.6% | 1_354del;555_950del;1042_1745del | |
| 32 | mouse | 76500 | Ip6k2 | inositol hexaphosphate kina... | XM_006511856.3 | 88.5% | 83.6% | (many diffs) |
| 33 | mouse | 76500 | Ip6k2 | inositol hexaphosphate kina... | XM_006511855.2 | 28.2% | 24.3% | (many diffs) |
| 34 | mouse | 76500 | Ip6k2 | inositol hexaphosphate kina... | XM_006511853.2 | 24.4% | 21% | (many diffs) |
| 35 | mouse | 76500 | Ip6k2 | inositol hexaphosphate kina... | XM_006511854.3 | 24.4% | 21% | (many diffs) |
| 36 | mouse | 76500 | Ip6k2 | inositol hexaphosphate kina... | NM_029634.2 | 16.4% | 14.1% | (many diffs) |
| 37 | mouse | 76500 | Ip6k2 | inositol hexaphosphate kina... | XM_006511850.2 | 16.4% | 14.1% | (many diffs) |
| 38 | mouse | 76500 | Ip6k2 | inositol hexaphosphate kina... | XM_006511851.3 | 16.4% | 14.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 357
- ORF length:
- 291
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgag cccagccttc agggccatgg atgtggagcc ccgcgccaaa ggcgtccttc 121 tggagccctt tgtccaccag gtcggggggc actcatgcgt gctccgcttc aatgagacaa 181 ccctgtgcaa gcccctggtc ccaagggaac atcagttcta cgagaccctc cctgctgaga 241 tgcgcaaatt cactccccag tacaaaggac aaagccaaag gccccttgtt agctggccat 301 ccctgcccca ttttttcccc tggtcctttc ccctgtggcc acagggaagt gtggcctnnc 361 caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt 421 ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga 481 tta