Construct: ORF ccsbBroad304_15890
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010391.1_s304c1, BRDN0000409260
- Derived from:
- ccsbBroadEn_15890
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- YY1AP1 (55249)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15890
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55249 | YY1AP1 | YY1 associated protein 1 | NM_139121.2 | 100% | 100% | |
| 2 | human | 55249 | YY1AP1 | YY1 associated protein 1 | NM_001198899.1 | 92.5% | 92.5% | 1_165del |
| 3 | human | 55249 | YY1AP1 | YY1 associated protein 1 | NM_001198900.1 | 92.5% | 92.5% | 1_165del |
| 4 | human | 55249 | YY1AP1 | YY1 associated protein 1 | NM_018253.3 | 92.5% | 92.5% | 1_165del |
| 5 | human | 55249 | YY1AP1 | YY1 associated protein 1 | NM_001198901.1 | 91.2% | 91.2% | 1_198del |
| 6 | human | 55249 | YY1AP1 | YY1 associated protein 1 | NM_001198902.1 | 91.2% | 91.2% | 1_198del |
| 7 | human | 55249 | YY1AP1 | YY1 associated protein 1 | NM_139119.2 | 91.2% | 91.2% | 1_198del |
| 8 | human | 55249 | YY1AP1 | YY1 associated protein 1 | NM_001198905.1 | 88.5% | 88.5% | 1_198del;728_729ins60 |
| 9 | human | 55249 | YY1AP1 | YY1 associated protein 1 | NM_139118.2 | 81.3% | 81.3% | 1_396del;926_927ins60 |
| 10 | human | 55249 | YY1AP1 | YY1 associated protein 1 | NM_001198903.1 | 77% | 77% | 1_612del |
| 11 | human | 55249 | YY1AP1 | YY1 associated protein 1 | NM_001198904.1 | 74.7% | 74.7% | 1_612del;1142_1143ins60 |
| 12 | human | 54856 | GON4L | gon-4 like | NM_001282861.2 | 43.2% | 41.8% | (many diffs) |
| 13 | human | 54856 | GON4L | gon-4 like | NM_032292.6 | 43.2% | 41.8% | (many diffs) |
| 14 | human | 55249 | YY1AP1 | YY1 associated protein 1 | NM_001198906.2 | 34.6% | 32.4% | 1_396del;1193_1212del;1272_1273ins1196 |
| 15 | human | 54856 | GON4L | gon-4 like | XM_005245286.3 | 32.6% | 31.5% | (many diffs) |
| 16 | human | 54856 | GON4L | gon-4 like | XM_005245284.3 | 31.9% | 30.9% | (many diffs) |
| 17 | human | 54856 | GON4L | gon-4 like | XM_011509659.2 | 31.9% | 30.9% | (many diffs) |
| 18 | human | 54856 | GON4L | gon-4 like | NM_001282858.2 | 29.5% | 28.5% | (many diffs) |
| 19 | human | 54856 | GON4L | gon-4 like | XM_006711393.3 | 29.5% | 28.5% | (many diffs) |
| 20 | human | 54856 | GON4L | gon-4 like | XM_006711394.4 | 29.5% | 28.5% | (many diffs) |
| 21 | human | 54856 | GON4L | gon-4 like | NM_001282856.1 | 29.4% | 28.5% | (many diffs) |
| 22 | human | 54856 | GON4L | gon-4 like | NM_001282860.1 | 29.4% | 28.5% | (many diffs) |
| 23 | human | 54856 | GON4L | gon-4 like | XM_011509658.2 | 28.3% | 27.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2118
- ORF length:
- 2052
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgaa gaaaccttca gccaaacagc agaaggaggt agagaaggtt aaaccccagt 121 gtaaggaagt tcatcagacc ctgattctgg acccagcaca aaggaagaga ctccagcagc 181 agatgcagca gcatgttcag ctcttgacac aaatccacct tcttgccacc tgcaacccca 241 atctcaatcc ggaggccagt agcaccagga tatgtcttaa agagctggga acctttgctc 301 aaagctccat cgcccttcac catcagtaca accccaagtt tcagaccctg ttccaaccct 361 gtaacttgat gggagctatg cagctgattg aagacttcag cacacatgtc agcattgact 421 gcagccctca taaaactgtc aagaagactg ccaatgaatt tccctgtttg ccaaagcaag 481 tggcttggat cctggccaca agcaaggttt tcatgtatcc agagttactt ccagtgtgtt 541 ccctgaaggc aaagaatccc caggataaga tcctcttcac caaggctgag gacaatttgt 601 tagctttagg actgaagcat tttgaaggga ctgagtttct taaccctcta atcagcaagt 661 accttctaac ctgcaagact gcccgccaac tgacagtgag aatcaagaac ctcaacatga 721 acagagctcc tgacaacatc attaaatttt ataagaagac caaacagctg ccagtcctag 781 gaaaatgctg tgaagagatc cagccacatc agtggaagcc acctatagag agagaagaac 841 accggctccc attctggtta aaggccagtc tgccatccat ccaggaagaa ctgcggcaca 901 tggctgatgg tgctagagag gtaggaaata tgactggaac cactgagatc aactcagatc 961 aaggcctaga aaaagacaac tcagagttgg ggagtgaaac tcggtaccca ctgctattgc 1021 ctaagggtgt agtcctgaaa ctgaagccag ttgccgaccg tttccccaag aaggcttgga 1081 gacagaagcg ttcatcagtc ctgaaacccc tccttatcca acccagcccc tctctccagc 1141 ccagcttcaa ccctgggaaa acaccagccc aatcaactca ttcagaagcc cctccgagca 1201 aaatggtgct ccggattcct cacccaatac agccagccac tgttttacag acagttccag 1261 gtgtccctcc actgggggtc agtggaggtg agagttttga gtctcctgca gcactgcctg 1321 ctatgccccc tgaggccagg acaagcttcc ctctgtctga gtcccagact ttgctctctt 1381 ctgcccctgt gcccaaggta atgatgccct cccctgcctc ttccatgttt cgaaagccat 1441 atgtgagacg gagaccctca aaaagaaggg gagccagggc ctttcgctgt atcaaacctg 1501 cccctgttat ccaccctgca tctgttatct tcactgttcc tgctaccact gtgaagattg 1561 tgagccttgg cggtggctgt aacatgatcc agcctgtcaa tgcggctgtg gcccagagtc 1621 cccagactat tcccatcgcc accctcttgg ttaaccctac ttccttcccc tgtccattga 1681 accagcccct tgtggcctcc tctgtctcac ccttaattgt ttctggcaat tctgtgaatc 1741 ttcctatacc atccacccct gaagataagg cccacatgaa tgtggacatt gcttgtgctg 1801 tggctgatgg ggaaaatgcc tttcagggcc tagaacccaa attagagccc caggaactat 1861 ctcctctctc tgctactgtt ttccccaaag tggaacatag cccagggcct ccaccagtcg 1921 ataaacagtg ccaagaagga ttgtcagaga acagtgccta tcgctggacc gttgtgaaaa 1981 cagaggaggg aaggcaagct ctggagccgc tccctcaggg catccaggag tctctaaaca 2041 actcttcccc tggggattta gaggaagttg tcaagatgga acctgaagat gctacagagg 2101 aaatcagtgg atttctttnn ccaactttct tgtacaaagt ggttggtaag cctatcccta 2161 accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta 2221 agtcgacaat caacctctgg atta