Construct: ORF ccsbBroad304_16061
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007181.1_s304c1, BRDN0000403380
- Derived from:
- ccsbBroadEn_16061
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC39A13 (91252)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_16061
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 91252 | SLC39A13 | solute carrier family 39 me... | NM_152264.4 | 99.9% | 100% | 573G>A |
| 2 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XM_017018540.2 | 99.8% | 99.7% | 83A>G;573G>A |
| 3 | human | 91252 | SLC39A13 | solute carrier family 39 me... | NM_001128225.3 | 97.9% | 97.8% | 83A>G;573G>A;918_938del |
| 4 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XM_011520467.1 | 97.9% | 97.8% | 83A>G;573G>A;918_938del |
| 5 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XM_011520468.3 | 97.9% | 97.8% | 83A>G;573G>A;918_938del |
| 6 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XM_006718381.3 | 95.8% | 95.7% | 1_45del;128A>G;618G>A |
| 7 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XM_011520466.1 | 94.1% | 94% | (many diffs) |
| 8 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XM_017018541.2 | 90% | 89.8% | 83A>G;537_538ins108 |
| 9 | human | 91252 | SLC39A13 | solute carrier family 39 me... | NM_001330245.1 | 89.1% | 81.4% | 573G>A;915_916insGTAG;975_976ins113 |
| 10 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XM_011520470.2 | 88.3% | 88.1% | 83A>G;537_538ins108;810_830del |
| 11 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XM_024448762.1 | 87.7% | 87.6% | 83A>G;573G>A;918_1067del |
| 12 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XM_006718383.3 | 86.4% | 86.2% | 1_45del;128A>G;582_583ins108 |
| 13 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XM_006718384.2 | 85.5% | 78% | (many diffs) |
| 14 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XM_011520469.1 | 84.8% | 84.7% | (many diffs) |
| 15 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XM_006718385.2 | 76.1% | 68.8% | (many diffs) |
| 16 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XR_428862.3 | 73.5% | (many diffs) | |
| 17 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XR_428863.3 | 73.2% | (many diffs) | |
| 18 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XR_930928.2 | 72.5% | (many diffs) | |
| 19 | human | 91252 | SLC39A13 | solute carrier family 39 me... | NR_134854.1 | 65% | (many diffs) | |
| 20 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XR_001748028.1 | 44.8% | (many diffs) | |
| 21 | human | 91252 | SLC39A13 | solute carrier family 39 me... | XR_001748027.1 | 44.5% | (many diffs) | |
| 22 | mouse | 68427 | Slc39a13 | solute carrier family 39 (m... | NM_026721.3 | 86.9% | 89.5% | (many diffs) |
| 23 | mouse | 68427 | Slc39a13 | solute carrier family 39 (m... | XM_017319236.1 | 86.9% | 89.5% | (many diffs) |
| 24 | mouse | 68427 | Slc39a13 | solute carrier family 39 (m... | NM_001290765.1 | 84.1% | 86.4% | (many diffs) |
| 25 | mouse | 68427 | Slc39a13 | solute carrier family 39 (m... | XM_006500099.3 | 84.1% | 86.4% | (many diffs) |
| 26 | mouse | 68427 | Slc39a13 | solute carrier family 39 (m... | XM_006500101.2 | 78.2% | 81.3% | (many diffs) |
| 27 | mouse | 68427 | Slc39a13 | solute carrier family 39 (m... | XM_006500100.2 | 75.7% | 78.5% | (many diffs) |
| 28 | mouse | 68427 | Slc39a13 | solute carrier family 39 (m... | XM_011239756.2 | 61.5% | 56.5% | (many diffs) |
| 29 | mouse | 68427 | Slc39a13 | solute carrier family 39 (m... | XM_006500102.3 | 46.7% | 47.5% | (many diffs) |
| 30 | mouse | 68427 | Slc39a13 | solute carrier family 39 (m... | XR_374515.2 | 38.5% | (many diffs) | |
| 31 | mouse | 68427 | Slc39a13 | solute carrier family 39 (m... | XM_017319238.1 | 38% | 39.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1158
- ORF length:
- 1092
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgcc tggatgtccc tgccctggct gtggcatggc gggcccaagg ctcctcttcc 121 tcactgccct tgccctggag ctcttgggaa gggctggggg ttcccagccg gccctccgga 181 gccgggggac tgcgacggcc tgtcgcctgg acaacaagga aagcgagtcc tggggggctc 241 tgctgagcgg agagcggctg gacacctgga tctgctccct cctgggttcc ctcatggtgg 301 ggctcagtgg ggtcttcccg ttgcttgtca ttcccctaga gatggggacc atgctgcgct 361 cagaagctgg ggcctggcgc ctgaagcagc tgctcagctt cgccctgggg ggactcttgg 421 gcaatgtgtt tctgcatctg ctgcccgaag cctgggccta cacgtgcagc gccagccctg 481 gtggtgaggg gcagagcctg cagcagcagc aacagctggg gctgtgggtc attgctggca 541 tcctgacctt cctggcgttg gagaagatgt tcctggacag caaggaggag gggaccagcc 601 aggcccccaa caaagacccc actgctgctg ccgccgcact caatggaggc cactgtctgg 661 cccagccggc tgcagagccc ggcctcggtg ccgtggtccg gagcatcaaa gtcagcggct 721 acctcaacct gctggccaac accatcgata acttcaccca cgggctggct gtggctgcca 781 gcttccttgt gagcaagaag atcgggctcc tgacaaccat ggccatcctc ctgcatgaga 841 tcccccatga ggtgggcgac tttgccatcc tgctccgggc cggctttgac cgatggagcg 901 cagccaagct gcaactctca acagcgctgg ggggcctact gggcgctggc ttcgccatct 961 gtacccagtc ccccaaggga gtagaggaga cggcagcctg ggtcctgccc ttcacctctg 1021 gcggctttct ctacatcgcc ttggtgaacg tgctccctga cctcttggaa gaagaggacc 1081 cgtggcgctc cctgcagcag ctgcttctgc tctgtgcggg catcgtggta atggtgctgt 1141 tctcgctctt cgtggattnn ccaactttct tgtacaaagt ggttggtaag cctatcccta 1201 accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta 1261 agtcgacaat caacctctgg atta