Construct: ORF ccsbBroad304_16127
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012735.1_s304c1, BRDN0000411855
- Derived from:
- ccsbBroadEn_16127
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC16A9 (220963)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_16127
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 220963 | SLC16A9 | solute carrier family 16 me... | NM_001323981.1 | 99.9% | 100% | 111C>T |
| 2 | human | 220963 | SLC16A9 | solute carrier family 16 me... | NM_194298.2 | 99.9% | 100% | 111C>T |
| 3 | human | 220963 | SLC16A9 | solute carrier family 16 me... | XM_017015884.2 | 99.9% | 100% | 111C>T |
| 4 | human | 220963 | SLC16A9 | solute carrier family 16 me... | XM_024447878.1 | 99.9% | 100% | 111C>T |
| 5 | human | 220963 | SLC16A9 | solute carrier family 16 me... | XM_017015883.1 | 92.3% | 92.3% | 111C>T;1350_1475del |
| 6 | human | 220963 | SLC16A9 | solute carrier family 16 me... | NM_001323977.1 | 82.9% | 82.9% | 0_1ins261 |
| 7 | human | 220963 | SLC16A9 | solute carrier family 16 me... | NM_001323978.1 | 82.9% | 82.9% | 0_1ins261 |
| 8 | human | 220963 | SLC16A9 | solute carrier family 16 me... | NM_001323979.1 | 82.9% | 82.9% | 0_1ins261 |
| 9 | human | 220963 | SLC16A9 | solute carrier family 16 me... | NM_001323980.1 | 82.9% | 82.9% | 0_1ins261 |
| 10 | mouse | 66859 | Slc16a9 | solute carrier family 16 (m... | NM_025807.3 | 82.1% | 87.4% | (many diffs) |
| 11 | mouse | 66859 | Slc16a9 | solute carrier family 16 (m... | XM_006513960.3 | 82.1% | 87.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1596
- ORF length:
- 1527
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggaacttaaa aagtcgcctg acggtggatg gggctgggtg attgtgtttg 121 tctccttcct tactcagttt ttgtgttacg gatccccact agctgttgga gtcctgtata 181 tagaatggct ggatgccttt ggtgaaggaa aaggaaaaac agcctgggtt ggatccctgg 241 caagtggagt tggcttgctt gcaagtcctg tctgcagtct ctgtgtctca tcttttggag 301 caagacctgt cacaatcttc agtggcttca tggtggctgg aggcctgatg ttgagcagtt 361 ttgctcccaa tatctacttt ctgttttttt cctatggcat tgttgtaggt cttggatgtg 421 gtttattata cactgcaaca gtgaccatta cgtgccagta ttttgacgat cgccgaggcc 481 tagcgcttgg cctgatttca acaggttcaa gcgttggcct tttcatatat gctgctctgc 541 agaggatgct ggttgagttc tatggactgg atggatgctt gctgattgtg ggtgctttag 601 ctttaaatat attagcctgt ggcagtctga tgagacccct ccaatcttct gattgtcctt 661 tgcctaaaaa aatagctcca gaagatctac cagataaata ctccatttac aatgaaaaag 721 gaaagaatct ggaagaaaac ataaacattc ttgacaagag ctacagtagt gaggaaaaat 781 gcaggatcac gttagccaat ggtgactgga aacaagacag cctacttcat aaaaacccca 841 cagtgacaca cacaaaagag cctgaaacgt acaaaaagaa agttgcagaa cagacatatt 901 tttgcaaaca gcttgccaag aggaagtggc agttatataa aaactactgt ggtgaaactg 961 tggctctttt taaaaacaaa gtattttcag cccttttcat tgctatctta ctctttgaca 1021 tcggagggtt tccaccttca ttacttatgg aagatgtagc aagaagttca aacgtgaaag 1081 aagaagagtt tattatgcca cttatttcca ttataggcat tatgacagca gttggtaaac 1141 tgcttttagg gatactggct gacttcaagt ggattaatac cttgtatctt tatgttgcta 1201 ccttaatcat catgggccta gccttgtgtg caattccatt tgccaaaagc tatgtcacat 1261 tggcgttgct ttctgggatc ctagggtttc ttactggtaa ttggtccatc tttccatatg 1321 tgaccacgaa gactgtggga attgaaaaat tagcccatgc ctatgggata ttaatgttct 1381 ttgctggact tggaaatagc ctaggaccac ccatcgttgg ttggttttat gactggaccc 1441 agacctatga tattgcattt tattttagtg gcttctgcgt cctgctggga ggttttattc 1501 tgctgctggc agccttgccc tcttgggata catgcaacaa gcaactcccc aagccagctc 1561 caacaacttt cttgtacaaa gttgcctcta atgtttnncc aactttcttg tacaaagtgg 1621 ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg 1681 ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta