Construct: ORF ccsbBroadEn_00071
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013800.1_s300c1, BRDN0000392999
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANXA6 (309)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 309 | ANXA6 | annexin A6 | NM_001155.5 | 100% | 100% | |
| 2 | human | 309 | ANXA6 | annexin A6 | NM_001363114.2 | 99.1% | 99.1% | 1571_1572insGGTGGCTGCTGAGATCTT |
| 3 | human | 309 | ANXA6 | annexin A6 | NM_001193544.2 | 95.2% | 95.2% | 0_1ins96 |
| 4 | mouse | 11749 | Anxa6 | annexin A6 | NM_013472.5 | 89.4% | 94.3% | (many diffs) |
| 5 | mouse | 11749 | Anxa6 | annexin A6 | NM_001110211.2 | 88.5% | 93.4% | (many diffs) |
| 6 | mouse | 11749 | Anxa6 | annexin A6 | NR_138556.1 | 64.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2085
- ORF length:
- 2019
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CAAACCAGCA CAGGGTGCCA AGTACCGGGG CTCCATCCAT GACTTCCCAG 121 GCTTTGACCC CAACCAGGAT GCCGAGGCTC TGTACACTGC CATGAAGGGC TTTGGCAGTG 181 ACAAGGAGGC CATACTGGAC ATAATCACCT CACGGAGCAA CAGGCAGAGG CAGGAGGTCT 241 GCCAGAGCTA CAAGTCCCTC TACGGCAAGG ACCTCATTGC TGATTTAAAG TATGAATTGA 301 CGGGCAAGTT TGAACGGTTG ATTGTGGGCC TGATGAGGCC ACCTGCCTAT TGTGATGCCA 361 AAGAAATTAA AGATGCCATC TCGGGCATTG GCACTGATGA GAAGTGCCTC ATTGAGATCT 421 TGGCTTCCCG GACCAATGAG CAGATGCACC AGCTGGTGGC AGCATACAAA GATGCCTACG 481 AGCGGGACCT GGAGGCTGAC ATCATCGGCG ACACCTCTGG CCACTTCCAG AAGATGCTTG 541 TGGTCCTGCT CCAGGGAACC AGGGAGGAGG ATGACGTAGT GAGCGAGGAC CTGGTACAAC 601 AGGATGTCCA GGACCTATAC GAGGCAGGGG AACTGAAATG GGGAACAGAT GAAGCCCAGT 661 TCATTTACAT CTTGGGAAAT CGCAGCAAGC AGCATCTTCG GTTGGTGTTC GATGAGTATC 721 TGAAGACCAC AGGGAAGCCG ATTGAAGCCA GCATCCGAGG GGAGCTGTCT GGGGACTTTG 781 AGAAGCTAAT GCTGGCCGTA GTGAAGTGTA TCCGGAGCAC CCCGGAATAT TTTGCTGAAA 841 GGCTCTTCAA GGCTATGAAG GGCCTGGGGA CTCGGGACAA CACCCTGATC CGCATCATGG 901 TCTCCCGTAG TGAGTTGGAC ATGCTCGACA TTCGGGAGAT CTTCCGGACC AAGTATGAGA 961 AGTCCCTCTA CAGCATGATC AAGAATGACA CCTCTGGCGA GTACAAGAAG ACTCTGCTGA 1021 AGCTGTCTGG GGGAGATGAT GATGCTGCTG GCCAGTTCTT CCCGGAGGCA GCGCAGGTGG 1081 CCTATCAGAT GTGGGAACTT AGTGCAGTGG CCCGAGTAGA GCTGAAGGGA ACTGTGCGCC 1141 CAGCCAATGA CTTCAACCCT GACGCAGATG CCAAAGCGCT GCGGAAAGCC ATGAAGGGAC 1201 TCGGGACTGA CGAAGACACA ATCATCGATA TCATCACGCA CCGCAGCAAT GTCCAGCGGC 1261 AGCAGATCCG GCAGACCTTC AAGTCTCACT TTGGCCGGGA CTTAATGACT GACCTGAAGT 1321 CTGAGATCTC TGGAGACCTG GCAAGGCTGA TTCTGGGGCT CATGATGCCA CCGGCCCATT 1381 ACGATGCCAA GCAGTTGAAG AAGGCCATGG AGGGAGCCGG CACAGATGAA AAGGCTCTTA 1441 TTGAAATCCT GGCCACTCGG ACCAATGCTG AAATCCGGGC CATCAATGAG GCCTATAAGG 1501 AGGACTATCA CAAGTCCCTG GAGGATGCTC TGAGCTCAGA CACATCTGGC CACTTCAGGA 1561 GGATCCTCAT TTCTCTGGCC ACGGGGCATC GTGAGGAGGG AGGAGAAAAC CTGGACCAGG 1621 CACGGGAAGA TGCCCAGGTG GCTGCTGAGA TCTTGGAAAT AGCAGACACA CCTAGTGGAG 1681 ACAAAACTTC CTTGGAGACA CGTTTCATGA CGATCCTGTG TACCCGGAGC TATCCGCACC 1741 TCCGGAGAGT CTTCCAGGAG TTCATCAAGA TGACCAACTA TGACGTGGAG CACACCATCA 1801 AGAAGGAGAT GTCTGGGGAT GTCAGGGATG CATTTGTGGC CATTGTTCAA AGTGTCAAGA 1861 ACAAGCCTCT CTTCTTTGCC GACAAACTTT ACAAATCCAT GAAGGGTGCT GGCACAGATG 1921 AGAAGACTCT GACCAGGATC ATGGTATCCC GCAGTGAGAT TGACCTGCTC AACATCCGGA 1981 GGGAATTCAT TGAGAAATAT GACAAGTCTC TCCACCAAGC CATTGAGGGT GACACCTCCG 2041 GAGACTTCCT GAAGGCCTTG CTGGCTCTCT GTGGTGGTGA GGACGACCCA ACTTTCTTGT 2101 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c