Transcript: Human NM_001155.5

Homo sapiens annexin A6 (ANXA6), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-06
Taxon:
Homo sapiens (human)
Gene:
ANXA6 (309)
Length:
2889
CDS:
126..2147

Additional Resources:

NCBI RefSeq record:
NM_001155.5
NBCI Gene record:
ANXA6 (309)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001155.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000380966 AGTTGGACATGCTCGACATTC pLKO_005 973 CDS 100% 10.800 15.120 N ANXA6 n/a
2 TRCN0000380356 CGAAGACACAATCATCGATAT pLKO_005 1271 CDS 100% 10.800 15.120 N ANXA6 n/a
3 TRCN0000381506 GGTTGGTGTTCGATGAGTATC pLKO_005 760 CDS 100% 10.800 15.120 N ANXA6 n/a
4 TRCN0000008686 CGGTTGGTGTTCGATGAGTAT pLKO.1 759 CDS 100% 4.950 6.930 N ANXA6 n/a
5 TRCN0000008687 GCCTATCAGATGTGGGAACTT pLKO.1 1140 CDS 100% 4.950 6.930 N ANXA6 n/a
6 TRCN0000011462 CGACAAACTTTACAAATCCAT pLKO.1 1940 CDS 100% 3.000 4.200 N ANXA6 n/a
7 TRCN0000381229 AGGACCTCATTGCTGATTTAA pLKO_005 328 CDS 100% 15.000 10.500 N ANXA6 n/a
8 TRCN0000011461 CGGGCACTTCTGCCAAGAAAT pLKO.1 2162 3UTR 100% 13.200 9.240 N ANXA6 n/a
9 TRCN0000381717 GGCCATCAATGAGGCCTATAA pLKO_005 1538 CDS 100% 13.200 9.240 N ANXA6 n/a
10 TRCN0000381630 GGTGGTGGGAAGGATAGTAAA pLKO_005 2555 3UTR 100% 13.200 9.240 N ANXA6 n/a
11 TRCN0000381902 GCAAGTTTGAACGGTTGATTG pLKO_005 364 CDS 100% 10.800 7.560 N ANXA6 n/a
12 TRCN0000008688 CCTGCCTATTGTGATGCCAAA pLKO.1 402 CDS 100% 4.050 2.835 N ANXA6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001155.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00071 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_00071 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000479967 AAAGAGGCTTCGGTGCACCTTGCG pLX_317 17.4% 100% 100% V5 n/a
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