Construct: ORF ccsbBroadEn_00073
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000202.1_s300c1, BRDN0000395931
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANXA11 (311)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 311 | ANXA11 | annexin A11 | NM_001157.3 | 100% | 100% | |
| 2 | human | 311 | ANXA11 | annexin A11 | NM_001278407.2 | 100% | 100% | |
| 3 | human | 311 | ANXA11 | annexin A11 | NM_001278408.1 | 100% | 100% | |
| 4 | human | 311 | ANXA11 | annexin A11 | NM_145868.2 | 100% | 100% | |
| 5 | human | 311 | ANXA11 | annexin A11 | NM_145869.2 | 100% | 100% | |
| 6 | human | 311 | ANXA11 | annexin A11 | XM_011539736.3 | 100% | 100% | |
| 7 | human | 311 | ANXA11 | annexin A11 | NM_001278409.2 | 93.4% | 93.4% | 0_1ins99 |
| 8 | human | 311 | ANXA11 | annexin A11 | XM_005269742.1 | 91.4% | 88% | (many diffs) |
| 9 | human | 311 | ANXA11 | annexin A11 | XM_006717813.2 | 91.4% | 88% | (many diffs) |
| 10 | human | 311 | ANXA11 | annexin A11 | XM_005269741.4 | 82% | 81.3% | (many diffs) |
| 11 | mouse | 11744 | Anxa11 | annexin A11 | NM_013469.2 | 88.7% | 92.8% | (many diffs) |
| 12 | mouse | 11744 | Anxa11 | annexin A11 | XM_006518451.3 | 88.7% | 92.8% | (many diffs) |
| 13 | mouse | 100039484 | Gm2260 | predicted gene 2260 | XM_006519755.3 | 27.2% | 28.7% | (many diffs) |
| 14 | mouse | 100039503 | Gm2274 | predicted gene 2274 | XM_006519756.3 | 27.2% | 28.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1581
- ORF length:
- 1515
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG CTACCCTGGC TATCCCCCGC CCCCAGGTGG CTACCCACCA GCTGCACCAG 121 GTGGTGGTCC CTGGGGAGGT GCTGCCTACC CTCCTCCGCC CAGCATGCCC CCCATCGGGC 181 TGGATAACGT GGCCACCTAT GCGGGGCAGT TCAACCAGGA CTATCTCTCG GGAATGGCGG 241 CCAACATGTC TGGGACATTT GGAGGAGCCA ACATGCCCAA CCTGTACCCT GGGGCCCCTG 301 GGGCTGGCTA CCCACCAGTG CCCCCTGGCG GCTTTGGGCA GCCCCCCTCT GCCCAGCAGC 361 CTGTTCCTCC CTATGGGATG TATCCACCCC CAGGAGGAAA CCCACCCTCC AGGATGCCCT 421 CATATCCGCC ATACCCAGGG GCCCCTGTGC CGGGCCAGCC CATGCCACCC CCCGGACAGC 481 AGCCCCCAGG GGCCTACCCT GGGCAGCCAC CAGTGACCTA CCCTGGTCAG CCTCCAGTGC 541 CACTCCCTGG GCAGCAGCAG CCAGTGCCGA GCTACCCAGG ATACCCGGGG TCTGGGACTG 601 TCACCCCCGC TGTGCCCCCA ACCCAGTTTG GAAGCCGAGG CACCATCACT GATGCTCCCG 661 GCTTTGACCC CCTGCGAGAT GCCGAGGTCC TGCGGAAGGC CATGAAAGGC TTCGGGACGG 721 ATGAGCAGGC CATCATTGAC TGCCTGGGGA GTCGCTCCAA CAAGCAGCGG CAGCAGATCC 781 TACTTTCCTT CAAGACGGCT TACGGCAAGG ATTTGATCAA AGATCTGAAA TCTGAACTGT 841 CAGGAAACTT TGAGAAGACA ATCTTGGCTC TGATGAAGAC CCCAGTCCTC TTTGACATTT 901 ATGAGATAAA GGAAGCCATC AAGGGGGTTG GCACTGATGA AGCCTGCCTG ATTGAGATCC 961 TCGCTTCCCG CAGCAATGAG CACATCCGAG AATTAAACAG AGCCTACAAA GCAGAATTCA 1021 AAAAGACCCT GGAAGAGGCC ATTCGAAGCG ACACATCAGG GCACTTCCAG CGGCTCCTCA 1081 TCTCTCTCTC TCAGGGAAAC CGTGATGAAA GCACAAACGT GGACATGTCA CTCGCCCAGA 1141 GAGATGCCCA GGAGCTGTAT GCGGCCGGGG AGAACCGCCT GGGAACAGAC GAGTCCAAGT 1201 TCAATGCGGT TCTGTGCTCC CGGAGCCGGG CCCACCTGGT AGCAGTTTTC AATGAGTACC 1261 AGAGAATGAC AGGCCGGGAC ATTGAGAAGA GCATCTGCCG GGAGATGTCC GGGGACCTGG 1321 AGGAGGGCAT GCTGGCCGTG GTGAAATGTC TCAAGAATAC CCCAGCCTTC TTTGCGGAGA 1381 GGCTCAACAA GGCCATGAGG GGGGCAGGAA CAAAGGACCG GACCCTGATT CGCATCATGG 1441 TGTCTCGCAG CGAGACCGAC CTCCTGGACA TCAGATCAGA GTATAAGCGG ATGTACGGCA 1501 AGTCGCTGTA CCACGACATC TCGGGAGATA CTTCAGGGGA TTACCGGAAG ATTCTGCTGA 1561 AGATCTGTGG TGGCAATGAC TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 1621 attgcttatc aatttgttgc aacgaac