Construct: ORF ccsbBroadEn_00286

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005246.1_s300c1, BRDN0000456414
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDS1 (1040)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1040 CDS1 CDP-diacylglycerol synthase 1 NM_001263.4 100% 100%
2 human 1040 CDS1 CDP-diacylglycerol synthase 1 XM_017007648.2 95% 95% 810_811ins69
3 human 1040 CDS1 CDP-diacylglycerol synthase 1 XM_005262687.3 91.3% 91.3% 1030_1031ins120
4 human 1040 CDS1 CDP-diacylglycerol synthase 1 XM_017007649.2 86.3% 86.3% 810_811ins69;961_962ins120
5 human 1040 CDS1 CDP-diacylglycerol synthase 1 XM_017007650.2 78% 75.4% 1030_1031ins224;1080_1081ins79
6 human 1040 CDS1 CDP-diacylglycerol synthase 1 XM_017007651.2 73.1% 70.4% 810_811ins69;961_962ins224;1011_1012ins79
7 mouse 74596 Cds1 CDP-diacylglycerol synthase 1 NM_173370.3 86.6% 95.8% (many diffs)
8 mouse 74596 Cds1 CDP-diacylglycerol synthase 1 XM_006535263.2 75.1% 83.5% (many diffs)
9 mouse 74596 Cds1 CDP-diacylglycerol synthase 1 XM_006535264.1 70.6% 78.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1452
ORF length:
1383
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTTGGAGCTG AGGCACCGGG GAAGCTGCCC CGGCCCCAGG GAAGCGGTGT
121CGCCGCCACA CCGCGAGGGA GAGGCGGCCG GCGGCGACCA CGAAACCGAG AGCACCAGCG
181ACAAAGAAAC AGATATTGAT GACAGATATG GAGATTTGGA TTCCAGAACA GATTCTGATA
241TTCCGGAAAT TCCACCATCC TCAGATAGAA CCCCTGAGAT TCTCAAAAAA GCTCTATCTG
301GTTTATCTTC AAGGTGGAAA AACTGGTGGA TACGTGGAAT TCTCACTCTA ACTATGATCT
361CGTTGTTTTT CCTGATCATC TATATGGGAT CCTTCATGCT GATGCTTCTT GTTCTGGGCA
421TCCAAGTGAA ATGCTTCCAT GAAATTATCA CTATAGGTTA TAGAGTCTAT CATTCTTATG
481ATCTACCATG GTTTAGAACA CTAAGTTGGT ACTTTCTATT GTGTGTAAAC TACTTTTTCT
541ATGGAGAGAC TGTAGCTGAT TATTTTGCTA CATTTGTTCA AAGAGAAGAA CAACTTCAGT
601TCCTCATTCG CTACCATAGA TTTATATCAT TTGCCCTCTA TCTGGCAGGT TTCTGCATGT
661TTGTACTGAG TTTGGTGAAG AAACATTATC GTCTGCAGTT TTATATGTTC GCATGGACTC
721ATGTCACTTT ACTGATAACT GTCACTCAGT CACACCTTGT CATCCAAAAT CTGTTTGAAG
781GCATGATATG GTTCCTTGTT CCAATATCAA GTGTTATCTG CAATGACATA ACTGCTTACC
841TTTTTGGATT TTTTTTTGGG AGAACTCCAT TAATTAAGTT GTCTCCTAAA AAGACTTGGG
901AAGGATTCAT TGGTGGTTTC TTTTCCACAG TTGTGTTTGG ATTCATTGCT GCCTATGTGT
961TATCCAAATA CCAGTACTTT GTCTGCCCAG TGGAATACCG AAGTGATGTA AACTCCTTCG
1021TGACAGAATG TGAGCCCTCA GAACTTTTCC AGCTTCAGAC TTACTCACTT CCACCCTTTC
1081TAAAGGCAGT CTTGAGACAG GAAAGAGTGA GCTTGTACCC TTTCCAGATC CACAGCATTG
1141CACTGTCAAC CTTTGCATCT TTAATTGGCC CATTTGGAGG CTTCTTTGCT AGTGGATTCA
1201AAAGAGCCTT CAAAATCAAG GATTTTGCAA ATACCATTCC TGGACATGGT GGGATAATGG
1261ACAGATTTGA TTGTCAGTAT TTGATGGCAA CTTTTGTACA TGTGTACATC ACAAGTTTTA
1321TAAGGGGCCC AAATCCCAGC AAAGTGCTAC AGCAGTTGTT GGTGCTTCAA CCTGAACAGC
1381AGTTAAATAT ATATAAAACC CTGAAGACTC ATCTCATTGA GAAAGGAATC CTACAACCCA
1441CCTTGAAGGT ATTGCCAACT TTCTTGTACA AAGTTGGcat tataagaaag cattgcttat
1501caatttgttg caacgaac

Download FASTA (ORF) (Full)