Construct: ORF ccsbBroadEn_00381
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016837.1_s300c1, BRDN0000397962
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CSNK2A1 (1457)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1457 | CSNK2A1 | casein kinase 2 alpha 1 | NM_001362770.2 | 100% | 100% | |
| 2 | human | 1457 | CSNK2A1 | casein kinase 2 alpha 1 | NM_001362771.2 | 100% | 100% | |
| 3 | human | 1457 | CSNK2A1 | casein kinase 2 alpha 1 | NM_001895.4 | 100% | 100% | |
| 4 | human | 1457 | CSNK2A1 | casein kinase 2 alpha 1 | NM_177559.3 | 100% | 100% | |
| 5 | human | 283106 | CSNK2A3 | casein kinase 2 alpha 3 | NM_001256686.2 | 99.3% | 98.4% | (many diffs) |
| 6 | human | 1457 | CSNK2A1 | casein kinase 2 alpha 1 | NM_177560.3 | 65.2% | 65.2% | 0_1ins408 |
| 7 | mouse | 12995 | Csnk2a1 | casein kinase 2, alpha 1 po... | NM_007788.3 | 94.5% | 98.7% | (many diffs) |
| 8 | mouse | 12995 | Csnk2a1 | casein kinase 2, alpha 1 po... | XM_006498657.4 | 94.5% | 98.7% | (many diffs) |
| 9 | mouse | 12995 | Csnk2a1 | casein kinase 2, alpha 1 po... | XM_011239272.3 | 94.5% | 98.7% | (many diffs) |
| 10 | mouse | 12995 | Csnk2a1 | casein kinase 2, alpha 1 po... | XM_030247074.1 | 94.5% | 98.7% | (many diffs) |
| 11 | mouse | 12995 | Csnk2a1 | casein kinase 2, alpha 1 po... | XM_030247075.1 | 94.5% | 98.7% | (many diffs) |
| 12 | mouse | 12995 | Csnk2a1 | casein kinase 2, alpha 1 po... | XM_030247076.1 | 94.5% | 98.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1239
- ORF length:
- 1173
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC GGGACCCGTG CCAAGCAGGG CCAGAGTTTA CACAGATGTT AATACACACA 121 GACCTCGAGA ATACTGGGAT TACGAGTCAC ATGTGGTGGA ATGGGGAAAT CAAGATGACT 181 ACCAGCTGGT TCGAAAATTA GGCCGAGGTA AATACAGTGA AGTATTTGAA GCCATCAACA 241 TCACAAATAA TGAAAAAGTT GTTGTTAAAA TTCTCAAGCC AGTAAAAAAG AAGAAAATTA 301 AGCGTGAAAT AAAGATTTTG GAGAATTTGA GAGGAGGTCC CAACATCATC ACACTGGCAG 361 ACATTGTAAA AGACCCTGTG TCACGAACCC CCGCCTTGGT TTTTGAACAC GTAAACAACA 421 CAGACTTCAA GCAATTGTAC CAGACGTTAA CAGACTATGA TATTCGATTT TACATGTATG 481 AGATTCTGAA GGCCCTGGAT TATTGTCACA GCATGGGAAT TATGCACAGA GATGTCAAGC 541 CCCATAATGT CATGATTGAT CATGAGCACA GAAAGCTACG ACTAATAGAC TGGGGTTTGG 601 CTGAGTTTTA TCATCCTGGC CAAGAATATA ATGTCCGAGT TGCTTCCCGA TACTTCAAAG 661 GTCCTGAGCT ACTTGTAGAC TATCAGATGT ACGATTATAG TTTGGATATG TGGAGTTTGG 721 GTTGTATGCT GGCAAGTATG ATCTTTCGGA AGGAGCCATT TTTCCATGGA CATGACAATT 781 ATGATCAGTT GGTGAGGATA GCCAAGGTTC TGGGGACAGA AGATTTATAT GACTATATTG 841 ACAAATACAA CATTGAATTA GATCCACGTT TCAATGATAT CTTGGGCAGA CACTCTCGAA 901 AGCGATGGGA ACGCTTTGTC CACAGTGAAA ATCAGCACCT TGTCAGCCCT GAGGCCTTGG 961 ATTTCCTGGA CAAACTGCTG CGATATGACC ACCAGTCACG GCTTACTGCA AGAGAGGCAA 1021 TGGAGCACCC CTATTTCTAC ACTGTTGTGA AGGACCAGGC TCGAATGGGT TCATCTAGCA 1081 TGCCAGGGGG CAGTACGCCC GTCAGCAGCG CCAATATGAT GTCAGGGATT TCTTCAGTGC 1141 CAACCCCTTC ACCCCTTGGA CCTCTGGCAG GCTCACCAGT GATTGCTGCT GCCAACCCCC 1201 TTGGGATGCC TGTTCCAGCT GCCGCTGGCG CTCAGCAGTA CCTAACTTTC TTGTACAAAG 1261 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac