Construct: ORF ccsbBroadEn_00421

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013692.1_s300c1, BRDN0000395112
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DAPK1 (1612)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1612 DAPK1 death associated protein ki... NM_001288729.1 100% 100%
2 human 1612 DAPK1 death associated protein ki... NM_001288730.2 100% 100%
3 human 1612 DAPK1 death associated protein ki... NM_001288731.2 100% 100%
4 human 1612 DAPK1 death associated protein ki... NM_004938.4 100% 100%
5 human 1612 DAPK1 death associated protein ki... XM_017014360.1 70% 69.3% (many diffs)
6 human 1612 DAPK1 death associated protein ki... XM_005251757.4 57.8% 56.8% (many diffs)
7 mouse 69635 Dapk1 death associated protein ki... NM_029653.3 87.6% 95.1% (many diffs)
8 mouse 69635 Dapk1 death associated protein ki... NM_134062.2 87.6% 95.1% (many diffs)
9 mouse 69635 Dapk1 death associated protein ki... NM_001285917.1 86.9% 94.3% (many diffs)
10 mouse 69635 Dapk1 death associated protein ki... XM_006517370.3 86.9% 94.3% (many diffs)
11 mouse 69635 Dapk1 death associated protein ki... XM_006517371.3 86.4% 93.7% (many diffs)
12 mouse 69635 Dapk1 death associated protein ki... XM_017315598.1 85.6% 92.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
4359
ORF length:
4290
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GACCGTGTTC AGGCAGGAAA ACGTGGATGA TTACTACGAC ACCGGCGAGG
121AACTTGGCAG TGGACAGTTT GCGGTTGTGA AGAAATGCCG TGAGAAAAGC ACCGGCCTCC
181AGTATGCCGC CAAATTCATC AAGAAAAGGA GGACTAAGTC CAGCCGGCGG GGTGTGAGCC
241GCGAGGACAT CGAGCGGGAG GTCAGCATCC TGAAGGAGAT CCAGCACCCC AATGTCATCA
301CCCTGCACGA GGTCTATGAG AACAAGACGG ACGTCATCCT GATCTTGGAA CTCGTTGCAG
361GTGGCGAGCT GTTTGACTTC TTAGCTGAAA AGGAATCTTT AACTGAAGAG GAAGCAACTG
421AATTTCTCAA ACAAATTCTT AATGGTGTTT ACTACCTGCA CTCCCTTCAA ATCGCCCACT
481TTGATCTTAA GCCTGAGAAC ATAATGCTTT TGGATAGAAA TGTCCCCAAA CCTCGGATCA
541AGATCATTGA CTTTGGGTTG GCCCATAAAA TTGACTTTGG AAATGAATTT AAAAACATAT
601TTGGGACTCC AGAGTTTGTC GCTCCTGAGA TAGTCAACTA TGAACCTCTT GGTCTTGAGG
661CAGATATGTG GAGTATCGGG GTAATAACCT ATATCCTCCT AAGTGGGGCC TCCCCATTTC
721TTGGAGACAC TAAGCAAGAA ACGTTAGCAA ATGTATCCGC TGTCAACTAC GAATTTGAGG
781ATGAATACTT CAGTAATACC AGTGCCCTAG CCAAAGATTT CATAAGAAGA CTTCTGGTCA
841AGGATCCAAA GAAGAGAATG ACAATTCAAG ATAGTTTGCA GCATCCCTGG ATCAAGCCTA
901AAGATACACA ACAGGCACTT AGTAGAAAAG CATCAGCAGT AAACATGGAG AAATTCAAGA
961AGTTTGCAGC CCGGAAAAAA TGGAAACAAT CCGTTCGCTT GATATCACTG TGCCAAAGAT
1021TATCCAGGTC ATTCCTGTCC AGAAGTAACA TGAGTGTTGC CAGAAGCGAT GATACTCTGG
1081ATGAGGAAGA CTCCTTTGTG ATGAAAGCCA TCATCCATGC CATCAACGAT GACAATGTCC
1141CAGGCCTGCA GCACCTTCTG GGCTCATTAT CCAACTATGA TGTTAACCAA CCCAACAAGC
1201ACGGGACACC TCCATTACTC ATTGCTGCTG GCTGTGGGAA TATTCAAATA CTACAGTTGC
1261TCATTAAAAG AGGCTCGAGA ATCGATGTCC AGGATAAGGG CGGGTCCAAT GCCGTCTACT
1321GGGCTGCTCG GCATGGCCAC GTCGATACCT TGAAATTTCT CAGTGAGAAC AAATGCCCTT
1381TGGATGTGAA AGACAAGTCT GGAGAGATGG CCCTCCACGT GGCAGCTCGC TATGGCCATG
1441CTGACGTGGC TCAGTTACTG TGCAGCTTCG GCTCAAATCC CAATATCCAG GACAAGGAAG
1501AAGAAACCCC CCTGCACTGT GCTGCTTGGC ACGGCTATTA CTCTGTGGCC AAAGCCCTTT
1561GTGAAGCCGG CTGTAACGTG AACATCAAGA ACCGAGAAGG AGAGACGCCC CTCCTGACAG
1621CCTCTGCCAG GGGCTACCAC GACATCGTGG AGTGTCTGGC CGAACATGGA GCCGACCTTA
1681ATGCTTGCGA CAAGGACGGA CACATTGCCC TTCATCTGGC TGTAAGACGG TGTCAGATGG
1741AGGTAATCAA GACTCTCCTC AGCCAAGGGT GTTTCGTCGA TTATCAAGAC AGGCACGGCA
1801ATACTCCCCT CCATGTGGCA TGTAAAGATG GCAACATGCC TATCGTGGTG GCCCTCTGTG
1861AAGCAAACTG CAATTTGGAC ATCTCCAACA AGTATGGGCG AACGCCTCTG CACCTTGCGG
1921CCAACAACGG AATCCTAGAC GTGGTCCGGT ATCTCTGTCT GATGGGAGCC AGCGTTGAGG
1981CGCTGACCAC GGACGGAAAG ACGGCAGAAG ATCTTGCTAG ATCGGAACAG CACGAGCACG
2041TAGCAGGTCT CCTTGCAAGA CTTCGAAAGG ATACGCACCG AGGACTCTTC ATCCAGCAGC
2101TCCGACCCAC ACAGAACCTG CAGCCAAGAA TTAAGCTCAA GCTGTTTGGC CACTCGGGAT
2161CCGGGAAAAC CACCCTTGTA GAATCTCTCA AGTGTGGGCT GCTGAGGAGC TTTTTCAGAA
2221GGCGTCGGCC CAGACTGTCT TCCACCAACT CCAGCAGGTT CCCACCTTCA CCCCTGGCTT
2281CTAAGCCCAC AGTCTCAGTG AGCATCAACA ACCTGTACCC AGGCTGCGAG AACGTGAGTG
2341TGAGGAGCCG CAGCATGATG TTCGAGCCGG GTCTTACCAA AGGGATGCTG GAGGTGTTTG
2401TGGCCCCGAC CCACCACCCG CACTGCTCGG CCGATGACCA GTCCACCAAG GCCATCGACA
2461TCCAGAACGC TTATTTGAAT GGAGTTGGCG ATTTCAGCGT GTGGGAGTTC TCTGGAAATC
2521CTGTGTATTT CTGCTGTTAT GACTATTTTG CTGCAAATGA TCCCACGTCA ATCCATGTTG
2581TTGTCTTTAG TCTAGAAGAG CCCTATGAGA TCCAGCTGAA CCAAGTGATT TTCTGGCTCA
2641GTTTCCTGAA GTCCCTTGTC CCAGTTGAAG AACCCATAGC CTTCGGTGGC AAGCTGAAGA
2701ACCCACTCCA AGTTGTCCTG GTGGCCACCC ACGCTGACAT CATGAATGTT CCTCGACCGG
2761CTGGAGGCGA GTTTGGATAT GACAAAGACA CATCGTTGCT GAAAGAGATT AGGAACAGGT
2821TTGGAAATGA TCTTCACATT TCAAATAAGC TGTTTGTTCT GGATGCTGGG GCTTCTGGGT
2881CAAAGGACAT GAAGGTACTT CGAAATCATC TGCAAGAAAT ACGAAGCCAG ATTGTTTCGG
2941TCTGTCCTCC CATGACTCAC CTGTGTGAGA AAATCATCTC CACGCTGCCT TCCTGGAGGA
3001AGCTCAATGG ACCCAACCAG CTGATGTCGC TGCAGCAGTT TGTGTACGAC GTGCAGGACC
3061AGCTGAACCC CCTGGCCAGC GAGGAGGACC TCAGGCGCAT TGCTCAGCAG CTCCACAGCA
3121CAGGCGAGAT CAACATCATG CAAAGTGAAA CAGTTCAGGA CGTGCTGCTC CTGGACCCCC
3181GCTGGCTCTG CACAAACGTC CTGGGGAAGT TGCTGTCCGT GGAGACCCCA CGGGCGCTGC
3241ACCACTACCG GGGCCGCTAC ACCGTGGAGG ACATCCAGCG CCTGGTGCCC GACAGCGACG
3301TGGAGGAGCT GCTGCAGATC CTCGATGCCA TGGACATCTG CGCCCGGGAC CTGAGCAGCG
3361GGACCATGGT GGACGTCCCA GCCCTGATCA AGACAGACAA CCTGCACCGC TCCTGGGCTG
3421ATGAGGAGGA CGAGGTGATG GTGTATGGTG GCGTGCGCAT CGTGCCCGTG GAACACCTCA
3481CCCCCTTCCC ATGTGGCATC TTTCACAAGG TCCAGGTGAA CCTGTGCCGG TGGATCCACC
3541AGCAAAGCAC AGAGGGCGAC GCGGACATCC GCCTGTGGGT GAATGGCTGC AAGCTGGCCA
3601ACCGTGGGGC CGAGCTGCTG GTGCTGCTGG TCAACCACGG CCAGGGCATT GAGGTCCAGG
3661TCCGCGGCCT GGAGACGGAG AAGATCAAGT GCTGCCTGCT GCTGGACTCG GTGTGCAGCA
3721CCATTGAGAA CGTCATGGCC ACCACGCTGC CAGGGCTCCT GACCGTGAAG CATTACCTGA
3781GCCCCCAGCA GCTGCGGGAG CACCATGAGC CCGTCATGAT CTACCAGCCA CGGGACTTCT
3841TCCGGGCACA GACTCTGAAG GAAACCTCAC TGACCAACAC CATGGGGGGG TACAAGGAAA
3901GCTTCAGCAG CATCATGTGC TTCGGGTGTC ACGACGTCTA CTCACAGGCC AGCCTCGGCA
3961TGGACATCCA TGCATCAGAC CTGAACCTCC TCACTCGGAG GAAACTGAGT CGCCTGCTGG
4021ACCCGCCCGA CCCCCTGGGG AAGGACTGGT GCCTTCTCGC CATGAACTTA GGCCTCCCTG
4081ACCTCGTGGC AAAGTACAAC ACCAGTAACG GGGCTCCCAA GGATTTCCTC CCCAGCCCCC
4141TCCACGCCCT GCTGCGGGAA TGGACCACCT ACCCTGAGAG CACAGTGGGC ACCCTCATGT
4201CCAAACTGAG GGAGCTGGGT CGCCGGGATG CCGCAGACTT TTTGCTGAAG GCATCCTCTG
4261TGTTCAAAAT CAACCTGGAT GGCAATGGCC AGGAGGCCTA TGCCTCGAGC TGCAACAGCG
4321GCACCTCTTA CAATTCCATT AGCTCTGTTG TATCCCGGTT GCCAACTTTC TTGTACAAAG
4381Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)