Construct: ORF ccsbBroadEn_00495

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013140.1_s300c1, BRDN0000392684
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ELAVL2 (1993)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001171195.2 100% 100%
2 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001171197.2 100% 100%
3 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351477.2 100% 100%
4 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351478.1 100% 100%
5 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351472.2 96.3% 96.3% 712_750del
6 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351473.1 96.3% 96.3% 712_750del
7 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351474.1 96.3% 96.3% 712_750del
8 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351475.1 96.3% 96.3% 712_750del
9 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351476.2 96.3% 96.3% 712_750del
10 human 1993 ELAVL2 ELAV like RNA binding prote... NM_004432.5 96.3% 96.3% 712_750del
11 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351467.2 96.1% 96.1% 712_753del
12 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351468.2 96.1% 96.1% 712_753del
13 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351469.1 96.1% 96.1% 712_753del
14 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351470.2 96.1% 96.1% 712_753del
15 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351471.2 96.1% 96.1% 712_753del
16 human 1993 ELAVL2 ELAV like RNA binding prote... XM_005251393.3 96.1% 96.1% 712_753del
17 human 1993 ELAVL2 ELAV like RNA binding prote... XM_011517785.2 96.1% 96.1% 712_753del
18 human 1993 ELAVL2 ELAV like RNA binding prote... XM_011517786.2 96.1% 96.1% 712_753del
19 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351466.2 92.7% 92.7% 1_42del;754_792del
20 human 1993 ELAVL2 ELAV like RNA binding prote... XM_011517783.3 92.5% 92.5% 1_42del;754_795del
21 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351464.2 92.2% 92.2% 1_87del
22 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351465.2 92.2% 92.2% 1_87del
23 human 1993 ELAVL2 ELAV like RNA binding prote... XM_011517776.2 92% 92% 1_87del;799_801delAGC
24 human 1993 ELAVL2 ELAV like RNA binding prote... XM_017014415.1 92% 92% 1_51del;763_801del
25 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351462.2 89.4% 89.4% 1_84del;796_834del
26 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351463.2 89.4% 89.4% 1_84del;796_834del
27 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351456.2 89.1% 89.1% 1_87del;799_837del
28 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351457.2 89.1% 89.1% 1_87del;799_837del
29 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351458.1 89.1% 89.1% 1_87del;799_837del
30 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351459.2 89.1% 89.1% 1_87del;799_837del
31 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351460.2 89.1% 89.1% 1_84del;796_837del
32 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351461.2 89.1% 89.1% 1_84del;796_837del
33 human 1993 ELAVL2 ELAV like RNA binding prote... NM_001351455.2 88.9% 88.9% 1_87del;799_840del
34 human 1993 ELAVL2 ELAV like RNA binding prote... XM_006716735.4 88.9% 88.9% 1_87del;799_840del
35 human 1993 ELAVL2 ELAV like RNA binding prote... XM_011517779.3 88.9% 88.9% 1_87del;799_840del
36 human 1993 ELAVL2 ELAV like RNA binding prote... XM_011517780.3 88.9% 88.9% 1_87del;799_840del
37 human 1993 ELAVL2 ELAV like RNA binding prote... XM_011517778.2 88.2% 88.2% 1_96del;808_849del
38 human 1993 ELAVL2 ELAV like RNA binding prote... XR_929212.2 73.2% 1_106del;820_933del;1141_1142ins117
39 human 1993 ELAVL2 ELAV like RNA binding prote... XR_002956763.1 66.4% 1_195del;909_1061del;1269_1270ins117
40 human 1993 ELAVL2 ELAV like RNA binding prote... XR_929211.1 61.7% 1_106del;820_972del;1060_1061ins237
41 human 1993 ELAVL2 ELAV like RNA binding prote... XM_024447438.1 60.9% 60.9% 0_1ins405
42 human 1993 ELAVL2 ELAV like RNA binding prote... XM_017014426.1 58.6% 58.6% 0_1ins405;307_348del
43 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_030253245.1 95.3% 99.7% (many diffs)
44 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_030253246.1 95.3% 99.7% (many diffs)
45 mouse 15569 Elavl2 ELAV like RNA binding prote... NM_207686.1 95.1% 99.4% (many diffs)
46 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_030253242.1 95.1% 99.4% (many diffs)
47 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_030253243.1 95.1% 99.4% (many diffs)
48 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_030253244.1 95.1% 99.4% (many diffs)
49 mouse 15569 Elavl2 ELAV like RNA binding prote... NM_001177883.2 91.9% 96.1% (many diffs)
50 mouse 15569 Elavl2 ELAV like RNA binding prote... NM_001374238.1 91.9% 96.1% (many diffs)
51 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_030253239.1 91.9% 96.1% (many diffs)
52 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_030253241.1 91.9% 96.1% (many diffs)
53 mouse 15569 Elavl2 ELAV like RNA binding prote... NM_010486.2 91.6% 95.8% (many diffs)
54 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_006502789.3 91.6% 95.8% (many diffs)
55 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_006502790.3 91.6% 95.8% (many diffs)
56 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_006502791.3 91.6% 95.8% (many diffs)
57 mouse 15569 Elavl2 ELAV like RNA binding prote... NM_207685.2 88.4% 92.4% (many diffs)
58 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_006502788.4 88.4% 92.4% (many diffs)
59 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_006502787.4 88.2% 92.2% (many diffs)
60 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_030253238.1 87.7% 91.7% (many diffs)
61 mouse 15569 Elavl2 ELAV like RNA binding prote... NM_001347149.2 85% 88.9% (many diffs)
62 mouse 15569 Elavl2 ELAV like RNA binding prote... NM_001374236.1 85% 88.9% (many diffs)
63 mouse 15569 Elavl2 ELAV like RNA binding prote... NM_001374237.1 85% 88.9% (many diffs)
64 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_017319989.2 85% 88.9% (many diffs)
65 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_030253236.1 85% 88.9% (many diffs)
66 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_030253237.1 85% 88.9% (many diffs)
67 mouse 15569 Elavl2 ELAV like RNA binding prote... NM_001357188.1 84.8% 88.6% (many diffs)
68 mouse 15569 Elavl2 ELAV like RNA binding prote... NM_001357189.1 84.8% 88.6% (many diffs)
69 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_006502784.4 84.8% 88.6% (many diffs)
70 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_006502785.4 84.8% 88.6% (many diffs)
71 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_017319987.2 84.8% 88.6% (many diffs)
72 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_030253232.1 84.8% 88.6% (many diffs)
73 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_030253233.1 84.8% 88.6% (many diffs)
74 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_030253234.1 84.8% 88.6% (many diffs)
75 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_006502781.4 63.9% 66.8% (many diffs)
76 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_011240448.3 63.8% 66.7% (many diffs)
77 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_030253231.1 62.5% 65.3% (many diffs)
78 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_006502779.4 62.3% 65.2% (many diffs)
79 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_030253247.1 44.9% 44.1% (many diffs)
80 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_017319990.2 31.3% 30.9% (many diffs)
81 mouse 15569 Elavl2 ELAV like RNA binding prote... XM_017319991.2 31.3% 30.9% (many diffs)
82 mouse 15569 Elavl2 ELAV like RNA binding prote... XR_003954881.1 4.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1104
ORF length:
1038
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AACACAACTG TCTAATGGGC CAACTTGCAA TAACACAGCC AATGGTCCAA
121CCACCATAAA CAACAACTGT TCGTCACCAG TTGACTCTGG GAACACAGAA GACAGCAAGA
181CCAACTTAAT AGTCAACTAC CTTCCTCAGA ACATGACACA GGAGGAACTA AAGAGTCTCT
241TTGGGAGCAT TGGTGAAATA GAGTCCTGTA AGCTTGTAAG AGACAAAATA ACAGGGCAGA
301GCTTGGGATA TGGCTTTGTG AACTACATTG ACCCCAAGGA TGCAGAGAAA GCTATCAACA
361CCCTGAATGG ATTGAGACTT CAAACCAAAA CAATAAAAGT TTCCTATGCT CGCCCAAGTT
421CAGCTTCTAT CAGAGATGCA AATTTATATG TCAGCGGACT TCCAAAAACA ATGACCCAGA
481AGGAGTTGGA ACAGCTTTTT TCACAATATG GACGCATTAT TACTTCTCGT ATTCTTGTCG
541ACCAGGTCAC TGGCATATCA AGGGGTGTAG GGTTTATTCG ATTTGACAAG CGAATTGAGG
601CAGAAGAAGC TATCAAAGGC CTAAATGGCC AGAAACCTCC CGGTGCCACG GAGCCAATCA
661CTGTAAAGTT TGCTAATAAC CCAAGCCAAA AAACCAATCA GGCCATCCTT TCCCAGCTGT
721ACCAGTCTCC AAACAGAAGG TATCCAGGAC CGCTAGCTCA GCAGGCACAG CGTTTTAGGT
781TTTCTCCAAT GACCATTGAC GGAATGACCA GTTTGGCTGG AATTAATATC CCTGGGCACC
841CTGGAACAGG GTGGTGTATA TTTGTGTACA ACCTGGCTCC TGACGCAGAT GAGAGTATCC
901TGTGGCAAAT GTTTGGGCCT TTTGGAGCTG TCACCAATGT GAAGGTCATC CGTGACTTTA
961ACACCAATAA ATGCAAAGGT TTTGGATTTG TGACTATGAC AAACTATGAT GAGGCTGCCA
1021TGGCGATAGC TAGCCTCAAT GGATACCGTC TGGGAGACAG AGTACTGCAG GTCTCCTTTA
1081AGACAAACAA AACGCACAAA GCCTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1141agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)