Transcript: Mouse XM_017319991.2

PREDICTED: Mus musculus ELAV like RNA binding protein 1 (Elavl2), transcript variant X32, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Elavl2 (15569)
Length:
4400
CDS:
487..1518

Additional Resources:

NCBI RefSeq record:
XM_017319991.2
NBCI Gene record:
Elavl2 (15569)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017319991.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000112021 CGCCTGATGCAGATGAAAGTA pLKO.1 1624 3UTR 100% 5.625 4.500 N Elavl2 n/a
2 TRCN0000112023 CAATGGTCCAACCACTGTAAA pLKO.1 1041 CDS 100% 13.200 9.240 N Elavl2 n/a
3 TRCN0000317610 CAATGGTCCAACCACTGTAAA pLKO_005 1041 CDS 100% 13.200 9.240 N Elavl2 n/a
4 TRCN0000021934 CCGTGACTTTAACACCAATAA pLKO.1 1697 3UTR 100% 13.200 9.240 N ELAVL2 n/a
5 TRCN0000319424 CTCTTGTCCTCAGTCCATTTA pLKO_005 1858 3UTR 100% 13.200 9.240 N Elavl2 n/a
6 TRCN0000421130 CTCTTGTCCTCAGTCCATTTA pLKO_005 1858 3UTR 100% 13.200 9.240 N ELAVL2 n/a
7 TRCN0000419651 GTTGGACAATCTGCTCAATAT pLKO_005 1484 CDS 100% 13.200 9.240 N ELAVL2 n/a
8 TRCN0000021936 GTCTCCTTTAAGACAAACAAA pLKO.1 1818 3UTR 100% 5.625 3.938 N ELAVL2 n/a
9 TRCN0000112024 GAAAGCTATCAACACTCTGAA pLKO.1 1278 CDS 100% 4.950 3.465 N Elavl2 n/a
10 TRCN0000112022 GCAGGTCTCCTTTAAGACAAA pLKO.1 1814 3UTR 100% 4.950 3.465 N Elavl2 n/a
11 TRCN0000317611 GCAGGTCTCCTTTAAGACAAA pLKO_005 1814 3UTR 100% 4.950 3.465 N Elavl2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017319991.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00495 pDONR223 100% 31.3% 30.9% None (many diffs) n/a
2 ccsbBroad304_00495 pLX_304 0% 31.3% 30.9% V5 (many diffs) n/a
3 TRCN0000471175 GTAAAGATAGGACGGCTTGTGCTG pLX_317 38.6% 31.3% 30.9% V5 (many diffs) n/a
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