Construct: ORF ccsbBroadEn_00505

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000666.1_s300c1, BRDN0000396881
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EPB41L1 (2036)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2036 EPB41L1 erythrocyte membrane protei... NM_001258331.2 100% 100%
2 human 2036 EPB41L1 erythrocyte membrane protei... NM_177996.2 100% 100%
3 human 2036 EPB41L1 erythrocyte membrane protei... XM_017027714.2 96.1% 96.1% 1_93del
4 human 2036 EPB41L1 erythrocyte membrane protei... XM_017027713.2 92.9% 92.9% 1_93del;2055_2138del
5 human 2036 EPB41L1 erythrocyte membrane protei... XM_017027712.2 91.6% 91.6% 1_93del;1355_1390del;2091_2174del
6 human 2036 EPB41L1 erythrocyte membrane protei... XM_011528683.1 91.3% 91.3% 1_186del;1448_1483del
7 human 2036 EPB41L1 erythrocyte membrane protei... XM_011528681.1 89.7% 89.7% 1_186del;2148_2228del
8 human 2036 EPB41L1 erythrocyte membrane protei... XM_011528682.1 89.6% 89.6% 1_186del;1298_1299insAGC;2145_2225del
9 human 2036 EPB41L1 erythrocyte membrane protei... XM_017027715.1 89.5% 89.5% 1_186del;1298_1299insAGC;2145_2228del
10 human 2036 EPB41L1 erythrocyte membrane protei... NM_001258329.1 88.5% 88.5% 1_186del;1448_1483del;2184_2264del
11 human 2036 EPB41L1 erythrocyte membrane protei... XM_017027716.1 88.5% 88.5% 1_186del;1448_1483del;2184_2264del
12 human 2036 EPB41L1 erythrocyte membrane protei... XM_017027717.2 88.5% 88.5% 1_186del;1448_1483del;2184_2264del
13 human 2036 EPB41L1 erythrocyte membrane protei... NM_012156.2 88.4% 88.4% 1_186del;1448_1483del;2184_2267del
14 human 2036 EPB41L1 erythrocyte membrane protei... XM_024451854.1 81.1% 81.1% 1262_1297del;1478_1479ins411
15 human 2036 EPB41L1 erythrocyte membrane protei... NM_001258330.1 76.6% 76.6% 1_93del;1535_1536ins411;1644_1727del
16 human 2036 EPB41L1 erythrocyte membrane protei... XM_017027719.2 76.6% 76.6% 1_93del;1535_1536ins411;1644_1727del
17 human 2036 EPB41L1 erythrocyte membrane protei... XM_017027720.1 76.3% 76.3% 1_186del;1628_1629ins411
18 human 2036 EPB41L1 erythrocyte membrane protei... XM_017027718.2 75.5% 75.5% (many diffs)
19 human 2036 EPB41L1 erythrocyte membrane protei... XM_011528685.1 72.8% 72.8% (many diffs)
20 human 2036 EPB41L1 erythrocyte membrane protei... XM_011528677.1 52% 52% 1262_1297del;1482_3518del;4035_4118del
21 human 2036 EPB41L1 erythrocyte membrane protei... XM_017027711.1 52% 52% 1262_1297del;1482_3518del;4035_4118del
22 human 2036 EPB41L1 erythrocyte membrane protei... XM_024451852.1 52% 52% 1262_1297del;1482_3518del;4035_4118del
23 human 2036 EPB41L1 erythrocyte membrane protei... XM_024451853.1 52% 52% 1262_1297del;1482_3518del;4035_4118del
24 human 2036 EPB41L1 erythrocyte membrane protei... XM_024451851.1 50.3% 50.3% (many diffs)
25 human 2036 EPB41L1 erythrocyte membrane protei... XM_011528671.1 49.9% 49.9% (many diffs)
26 human 2036 EPB41L1 erythrocyte membrane protei... XM_011528673.1 49.9% 49.9% (many diffs)
27 human 2036 EPB41L1 erythrocyte membrane protei... XM_011528667.1 49.1% 49.1% (many diffs)
28 mouse 13821 Epb41l1 erythrocyte membrane protei... NM_001291121.1 82% 86.6% (many diffs)
29 mouse 13821 Epb41l1 erythrocyte membrane protei... NM_001006664.3 80.9% 85.4% (many diffs)
30 mouse 13821 Epb41l1 erythrocyte membrane protei... NM_001291120.1 80.9% 85.4% (many diffs)
31 mouse 13821 Epb41l1 erythrocyte membrane protei... NM_013510.4 80.9% 85.4% (many diffs)
32 mouse 13821 Epb41l1 erythrocyte membrane protei... XM_017315393.1 80.8% 85.3% (many diffs)
33 mouse 13821 Epb41l1 erythrocyte membrane protei... XM_017315394.1 80% 84.5% (many diffs)
34 mouse 13821 Epb41l1 erythrocyte membrane protei... NM_001291122.1 71.7% 72.1% (many diffs)
35 mouse 13821 Epb41l1 erythrocyte membrane protei... NM_001291123.1 71.6% 72% (many diffs)
36 mouse 13821 Epb41l1 erythrocyte membrane protei... XM_011239281.1 70.7% 71.1% (many diffs)
37 mouse 13821 Epb41l1 erythrocyte membrane protei... XM_011239277.1 45.1% 47.6% (many diffs)
38 mouse 13821 Epb41l1 erythrocyte membrane protei... XM_006498711.3 44.7% 47.2% (many diffs)
39 mouse 13821 Epb41l1 erythrocyte membrane protei... XM_006498713.3 44.7% 47.2% (many diffs)
40 mouse 13821 Epb41l1 erythrocyte membrane protei... XM_006498714.3 44.7% 47.2% (many diffs)
41 mouse 13821 Epb41l1 erythrocyte membrane protei... XM_011239280.2 44.7% 47.2% (many diffs)
42 mouse 13821 Epb41l1 erythrocyte membrane protei... XM_017315383.1 44.7% 47.2% (many diffs)
43 mouse 13821 Epb41l1 erythrocyte membrane protei... XM_011239275.2 44.7% 47.2% (many diffs)
44 mouse 13821 Epb41l1 erythrocyte membrane protei... XM_011239278.1 44.6% 47.1% (many diffs)
45 mouse 13821 Epb41l1 erythrocyte membrane protei... XM_006498708.3 44.4% 46.9% (many diffs)
46 mouse 13821 Epb41l1 erythrocyte membrane protei... XM_011239276.1 44.3% 46.7% (many diffs)
47 mouse 13821 Epb41l1 erythrocyte membrane protei... XM_011239279.1 43.2% 45.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2403
ORF length:
2337
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GGAGAAGGAC TACAGTGAGG CCGATGGCCT TTCGGAGAGG ACCACGCCCA
121GCAAGGCCCA GAAATCGCCC CAGAAGATTG CCAAGAAATA CAAGAGTGCC ATCTGCCGGG
181TCACTCTGCT TGATGCCTCG GAGTATGAGT GTGAGGTGGA GAAACATGGC CGGGGCCAGG
241TGCTGTTTGA CCTGGTCTGT GAACACCTCA ACCTCCTAGA GAAGGACTAC TTCGGCCTGA
301CCTTCTGTGA TGCTGACAGC CAGAAGAACT GGCTGGACCC CTCCAAGGAG ATCAAGAAGC
361AGATCCGGAG TAGCCCCTGG AATTTTGCCT TCACAGTCAA GTTCTACCCG CCTGATCCTG
421CCCAGCTGAC AGAAGACATC ACAAGATACT ACCTGTGCCT GCAGCTGCGG GCAGACATCA
481TCACGGGCCG GCTGCCATGC TCCTTTGTCA CGCATGCCCT ACTGGGCTCC TACGCTGTGC
541AGGCTGAGCT GGGTGACTAT GATGCTGAGG AGCATGTGGG CAACTATGTC AGCGAGCTCC
601GCTTCGCCCC TAACCAGACC CGGGAGCTGG AGGAGAGGAT CATGGAGCTG CATAAGACAT
661ATAGGGGGAT GACCCCGGGA GAAGCAGAAA TCCACTTCTT AGAGAATGCC AAGAAGCTTT
721CCATGTACGG AGTAGACCTG CACCATGCCA AGGACTCTGA GGGCATCGAC ATCATGTTAG
781GCGTTTGTGC CAATGGCCTG CTCATCTACC GGGACCGGCT GAGAATCAAC CGCTTTGCCT
841GGCCCAAGAT CCTCAAGATC TCCTACAAGA GGAGTAACTT CTATATCAAG ATCCGGCCTG
901GGGAGTATGA GCAATTTGAG AGCACAATTG GCTTTAAGCT CCCAAACCAC CGGTCAGCCA
961AGAGACTGTG GAAGGTCTGC ATCGAGCATC ATACATTCTT CCGGCTGGTG TCCCCTGAGC
1021CCCCACCCAA GGGCTTCCTG GTGATGGGCT CCAAGTTCCG GTACAGTGGG AGGACCCAGG
1081CACAGACTCG CCAGGCCAGC GCCCTCATTG ACCGGCCTGC ACCCTTCTTT GAGCGTTCTT
1141CCAGCAAACG GTACACCATG TCCCGCAGCC TTGATGGAGC AGAGTTCTCC CGCCCAGCCT
1201CGGTCAGCGA GAACCATGAT GCAGGGCCTG ACGGTGACAA GCGGGATGAG GATGGCGAGT
1261CTGGGGGGCA ACGGTCAGAG GCTGAGGAGG GAGAGGTCAG GACTCCAACC AAGATCAAGG
1321AGCTAAAGTT CTTAGACAAG CCAGAAGATG TCTTGCTGAA GCACCAGGCC AGCATCAATG
1381AGCTCAAAAG GACCCTGAAG GAGCCCAACA GCAAACTCAT CCACCGGGAT CGAGACTGGG
1441AACGGGAGCG CAGGCTGCCC TCCTCCCCCG CCTCCCCCTC CCCCAAGGGC ACCCCTGAGA
1501AAGCCAATGA GAGAGCAGGG CTGAGGGAGG GCTCCGAGGA GAAAGTCAAA CCACCACGTC
1561CCCGGGCCCC AGAGAGTGAC ACAGGCGATG AGGACCAGGA CCAGGAGAGG GACACGGTGT
1621TCCTGAAGGA CAACCACCTG GCCATTGAGC GCAAGTGCTC CAGCATCACG GTCAGCTCTA
1681CGTCTAGCCT GGAGGCTGAG GTGGACTTCA CGGTCATTGG TGACTACCAT GGCAGCGCCT
1741TCGAAGACTT CTCCCGCAGC CTGCCTGAGC TCGACCGGGA CAAAAGCGAC TCGGACACTG
1801AGGGCCTGCT GTTCTCCCGG GATCTCAACA AGGGGGCCCC CAGCCAGGAT GATGAGTCTG
1861GGGGCATTGA GGACAGCCCG GATCGAGGGG CCTGCTCCAC CCCGGATATG CCCCAGTTTG
1921AGCCCGTGAA AACAGAAACC ATGACTGTCA GCAGTCTGGC CATTAGAAAG AAGATTGAGC
1981CGGAGGCCGT ACTGCAGACC AGAGTCTCCG CTATGGATAA CACCCAGGAG AACAGTCTCA
2041AGTCCGGGAA GGGGGCAGCT GCCATGATCC CAGGCCCACA GACGGTGGCC ACGGAAATCC
2101GTTCTCTTTC TCCGATCATC GGGAAAGATG TCCTCACCAG CACCTACGGC GCCACTGCGG
2161AAACCCTCTC AACCTCCACC ACCACCCATG TCACCAAAAC TGTGAAAGGA GGGTTTTCTG
2221AGACAAGGAT CGAGAAGCGA ATCATCATTA CTGGGGATGA AGATGTCGAT CAAGACCAGG
2281CCCTGGCTTT GGCCATCAAG GAGGCCAAAC TGCAGCATCC TGATATGCTG GTAACCAAAG
2341CTGTCGTATA CAGAGAAACA GACCCATCCC CAGAGGAGAG GGACAAGAAG CCACAGGAAT
2401CCTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
2461gcaacgaac

Download FASTA (ORF) (Full)

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