Construct: ORF ccsbBroadEn_00559

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016057.1_s300c1, BRDN0000388295
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FGF13 (2258)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2258 FGF13 fibroblast growth factor 13 NM_004114.5 100% 100%
2 human 2258 FGF13 fibroblast growth factor 13 NM_001139500.2 80.3% 69.2% (many diffs)
3 human 2258 FGF13 fibroblast growth factor 13 XM_005262399.1 80.3% 69.2% (many diffs)
4 human 2258 FGF13 fibroblast growth factor 13 XM_024452352.1 78.1% 71.2% (many diffs)
5 human 2258 FGF13 fibroblast growth factor 13 NM_001139498.2 77.6% 75.5% (many diffs)
6 human 2258 FGF13 fibroblast growth factor 13 NM_001139501.2 77.4% 77.2% (many diffs)
7 human 2258 FGF13 fibroblast growth factor 13 NM_001139502.2 77.4% 77.2% (many diffs)
8 human 2258 FGF13 fibroblast growth factor 13 NM_033642.3 76.6% 75.1% (many diffs)
9 mouse 14168 Fgf13 fibroblast growth factor 13 NM_010200.3 95.5% 99.5% (many diffs)
10 mouse 14168 Fgf13 fibroblast growth factor 13 NM_001290414.1 76.8% 68.8% (many diffs)
11 mouse 14168 Fgf13 fibroblast growth factor 13 XM_006527793.2 76.8% 68.8% (many diffs)
12 mouse 14168 Fgf13 fibroblast growth factor 13 XM_006527795.1 76.8% 68.8% (many diffs)
13 mouse 14168 Fgf13 fibroblast growth factor 13 XM_006527796.3 76.8% 68.8% (many diffs)
14 mouse 14168 Fgf13 fibroblast growth factor 13 XM_006527797.2 74.1% 75.1% (many diffs)
15 mouse 14168 Fgf13 fibroblast growth factor 13 XM_006527799.2 73.1% 74.2% (many diffs)
16 mouse 14168 Fgf13 fibroblast growth factor 13 NM_001290415.1 73.1% 74.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
801
ORF length:
735
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGCGGCTATC GCCAGCTCGC TCATCCGTCA GAAGAGGCAA GCCCGCGAGC
121GCGAGAAATC CAACGCCTGC AAGTGTGTCA GCAGCCCCAG CAAAGGCAAG ACCAGCTGCG
181ACAAAAACAA GTTAAATGTC TTTTCCCGGG TCAAACTCTT CGGCTCCAAG AAGAGGCGCA
241GAAGAAGACC AGAGCCTCAG CTTAAGGGTA TAGTTACCAA GCTATACAGC CGACAAGGCT
301ACCACTTGCA GCTGCAGGCG GATGGAACCA TTGATGGCAC CAAAGATGAG GACAGCACTT
361ACACTCTGTT TAACCTCATC CCTGTGGGTC TGCGAGTGGT GGCTATCCAA GGAGTTCAAA
421CCAAGCTGTA CTTGGCAATG AACAGTGAGG GATACTTGTA CACCTCGGAA CTTTTCACAC
481CTGAGTGCAA ATTCAAAGAA TCAGTGTTTG AAAATTATTA TGTGACATAT TCATCAATGA
541TATACCGTCA GCAGCAGTCA GGCCGAGGGT GGTATCTGGG TCTGAACAAA GAAGGAGAGA
601TCATGAAAGG CAACCATGTG AAGAAGAACA AGCCTGCAGC TCATTTTCTG CCTAAACCAC
661TGAAAGTGGC CATGTACAAG GAGCCATCAC TGCACGATCT CACGGAGTTC TCCCGATCTG
721GAAGCGGGAC CCCAACCAAG AGCAGAAGTG TCTCTGGCGT GCTGAACGGA GGCAAATCCA
781TGAGCCACAA TGAATCAACG TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
841attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)