Construct: ORF ccsbBroadEn_00559
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016057.1_s300c1, BRDN0000388295
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FGF13 (2258)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2258 | FGF13 | fibroblast growth factor 13 | NM_004114.5 | 100% | 100% | |
| 2 | human | 2258 | FGF13 | fibroblast growth factor 13 | NM_001139500.2 | 80.3% | 69.2% | (many diffs) |
| 3 | human | 2258 | FGF13 | fibroblast growth factor 13 | XM_005262399.1 | 80.3% | 69.2% | (many diffs) |
| 4 | human | 2258 | FGF13 | fibroblast growth factor 13 | XM_024452352.1 | 78.1% | 71.2% | (many diffs) |
| 5 | human | 2258 | FGF13 | fibroblast growth factor 13 | NM_001139498.2 | 77.6% | 75.5% | (many diffs) |
| 6 | human | 2258 | FGF13 | fibroblast growth factor 13 | NM_001139501.2 | 77.4% | 77.2% | (many diffs) |
| 7 | human | 2258 | FGF13 | fibroblast growth factor 13 | NM_001139502.2 | 77.4% | 77.2% | (many diffs) |
| 8 | human | 2258 | FGF13 | fibroblast growth factor 13 | NM_033642.3 | 76.6% | 75.1% | (many diffs) |
| 9 | mouse | 14168 | Fgf13 | fibroblast growth factor 13 | NM_010200.3 | 95.5% | 99.5% | (many diffs) |
| 10 | mouse | 14168 | Fgf13 | fibroblast growth factor 13 | NM_001290414.1 | 76.8% | 68.8% | (many diffs) |
| 11 | mouse | 14168 | Fgf13 | fibroblast growth factor 13 | XM_006527793.2 | 76.8% | 68.8% | (many diffs) |
| 12 | mouse | 14168 | Fgf13 | fibroblast growth factor 13 | XM_006527795.1 | 76.8% | 68.8% | (many diffs) |
| 13 | mouse | 14168 | Fgf13 | fibroblast growth factor 13 | XM_006527796.3 | 76.8% | 68.8% | (many diffs) |
| 14 | mouse | 14168 | Fgf13 | fibroblast growth factor 13 | XM_006527797.2 | 74.1% | 75.1% | (many diffs) |
| 15 | mouse | 14168 | Fgf13 | fibroblast growth factor 13 | XM_006527799.2 | 73.1% | 74.2% | (many diffs) |
| 16 | mouse | 14168 | Fgf13 | fibroblast growth factor 13 | NM_001290415.1 | 73.1% | 74.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 801
- ORF length:
- 735
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCGGCTATC GCCAGCTCGC TCATCCGTCA GAAGAGGCAA GCCCGCGAGC 121 GCGAGAAATC CAACGCCTGC AAGTGTGTCA GCAGCCCCAG CAAAGGCAAG ACCAGCTGCG 181 ACAAAAACAA GTTAAATGTC TTTTCCCGGG TCAAACTCTT CGGCTCCAAG AAGAGGCGCA 241 GAAGAAGACC AGAGCCTCAG CTTAAGGGTA TAGTTACCAA GCTATACAGC CGACAAGGCT 301 ACCACTTGCA GCTGCAGGCG GATGGAACCA TTGATGGCAC CAAAGATGAG GACAGCACTT 361 ACACTCTGTT TAACCTCATC CCTGTGGGTC TGCGAGTGGT GGCTATCCAA GGAGTTCAAA 421 CCAAGCTGTA CTTGGCAATG AACAGTGAGG GATACTTGTA CACCTCGGAA CTTTTCACAC 481 CTGAGTGCAA ATTCAAAGAA TCAGTGTTTG AAAATTATTA TGTGACATAT TCATCAATGA 541 TATACCGTCA GCAGCAGTCA GGCCGAGGGT GGTATCTGGG TCTGAACAAA GAAGGAGAGA 601 TCATGAAAGG CAACCATGTG AAGAAGAACA AGCCTGCAGC TCATTTTCTG CCTAAACCAC 661 TGAAAGTGGC CATGTACAAG GAGCCATCAC TGCACGATCT CACGGAGTTC TCCCGATCTG 721 GAAGCGGGAC CCCAACCAAG AGCAGAAGTG TCTCTGGCGT GCTGAACGGA GGCAAATCCA 781 TGAGCCACAA TGAATCAACG TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 841 attgcttatc aatttgttgc aacgaac