Construct: ORF ccsbBroadEn_00710

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010075.1_s300c1, BRDN0000396047
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GUSB (2990)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2990 GUSB glucuronidase beta NM_000181.4 100% 100%
2 human 2990 GUSB glucuronidase beta XM_005250297.4 92.1% 92.1% 912_913ins153
3 human 2990 GUSB glucuronidase beta XR_927461.3 86.7% 1_45del;1289_1290ins40;1959_2164del
4 human 2990 GUSB glucuronidase beta NR_120531.2 84.9% 1_30del;1421_1422ins85;1899_2114del
5 human 2990 GUSB glucuronidase beta XR_001744659.2 82.6% (many diffs)
6 human 2990 GUSB glucuronidase beta XR_001744660.2 79.8% (many diffs)
7 human 2990 GUSB glucuronidase beta NM_001284290.2 77.5% 77.5% 472_473ins438
8 human 2990 GUSB glucuronidase beta XR_001744658.2 77.5% (many diffs)
9 human 2990 GUSB glucuronidase beta XR_001744661.2 75.9% (many diffs)
10 human 2990 GUSB glucuronidase beta XM_011516113.1 73.1% 65.5% 0_1ins329;67_68ins185;209_221del
11 human 2990 GUSB glucuronidase beta NM_001293104.2 70.6% 70.3% (many diffs)
12 human 2990 GUSB glucuronidase beta NM_001293105.2 66.3% 62.6% 0_1ins329;64_65ins328
13 human 2990 GUSB glucuronidase beta XM_017012091.1 65.4% 57.8% (many diffs)
14 human 2990 GUSB glucuronidase beta XM_011516114.2 64.4% 63.7% 0_1ins685;38_50del
15 human 2990 GUSB glucuronidase beta XM_017012092.1 62.8% 62.5% (many diffs)
16 human 2990 GUSB glucuronidase beta XM_017012093.2 56.7% 55.9% 0_1ins685;38_50del;240_241ins153
17 human 11039 GUSBP14 GUSB pseudogene 14 NR_024054.2 28.1% (many diffs)
18 human 100133050 LOC100133050 glucuronidase beta pseudogene NR_027503.1 25.9% (many diffs)
19 human 375513 GUSBP4 GUSB pseudogene 4 NR_133000.1 23.7% (many diffs)
20 human 102725009 LOC102725009 putative inactive beta-gluc... XM_017030249.2 19.9% 8.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2019
ORF length:
1953
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CCGGGGGTCG GCGGTTGCCT GGGCGGCGCT CGGGCCGTTG TTGTGGGGCT
121GCGCGCTGGG GCTGCAGGGC GGGATGCTGT ACCCCCAGGA GAGCCCGTCG CGGGAGTGCA
181AGGAGCTGGA CGGCCTCTGG AGCTTCCGCG CCGACTTCTC TGACAACCGA CGCCGGGGCT
241TCGAGGAGCA GTGGTACCGG CGGCCGCTGT GGGAGTCAGG CCCCACCGTG GACATGCCAG
301TTCCCTCCAG CTTCAATGAC ATCAGCCAGG ACTGGCGTCT GCGGCATTTT GTCGGCTGGG
361TGTGGTACGA ACGGGAGGTG ATCCTGCCGG AGCGATGGAC CCAGGACCTG CGCACAAGAG
421TGGTGCTGAG GATTGGCAGT GCCCATTCCT ATGCCATCGT GTGGGTGAAT GGGGTCGACA
481CGCTAGAGCA TGAGGGGGGC TACCTCCCCT TCGAGGCCGA CATCAGCAAC CTGGTCCAGG
541TGGGGCCCCT GCCCTCCCGG CTCCGAATCA CTATCGCCAT CAACAACACA CTCACCCCCA
601CCACCCTGCC ACCAGGGACC ATCCAATACC TGACTGACAC CTCCAAGTAT CCCAAGGGTT
661ACTTTGTCCA GAACACATAT TTTGACTTTT TCAACTACGC TGGACTGCAG CGGTCTGTAC
721TTCTGTACAC GACACCCACC ACCTACATCG ATGACATCAC CGTCACCACC AGCGTGGAGC
781AAGACAGTGG GCTGGTGAAT TACCAGATCT CTGTCAAGGG CAGTAACCTG TTCAAGTTGG
841AAGTGCGTCT TTTGGATGCA GAAAACAAAG TCGTGGCGAA TGGGACTGGG ACCCAGGGCC
901AACTTAAGGT GCCAGGTGTC AGCCTCTGGT GGCCGTACCT GATGCACGAA CGCCCTGCCT
961ATCTGTATTC ATTGGAGGTG CAGCTGACTG CACAGACGTC ACTGGGGCCT GTGTCTGACT
1021TCTACACACT CCCTGTGGGG ATCCGCACTG TGGCTGTCAC CAAGAGCCAG TTCCTCATCA
1081ATGGGAAACC TTTCTATTTC CACGGTGTCA ACAAGCATGA GGATGCGGAC ATCCGAGGGA
1141AGGGCTTCGA CTGGCCGCTG CTGGTGAAGG ACTTCAACCT GCTTCGCTGG CTTGGTGCCA
1201ACGCTTTCCG TACCAGCCAC TACCCCTATG CAGAGGAAGT GATGCAGATG TGTGACCGCT
1261ATGGGATTGT GGTCATCGAT GAGTGTCCCG GCGTGGGCCT GGCGCTGCCG CAGTTCTTCA
1321ACAACGTTTC TCTGCATCAC CACATGCAGG TGATGGAAGA AGTGGTGCGT AGGGACAAGA
1381ACCACCCCGC GGTCGTGATG TGGTCTGTGG CCAACGAGCC TGCGTCCCAC CTAGAATCTG
1441CTGGCTACTA CTTGAAGATG GTGATCGCTC ACACCAAATC CTTGGACCCC TCCCGGCCTG
1501TGACCTTTGT GAGCAACTCT AACTATGCAG CAGACAAGGG GGCTCCGTAT GTGGATGTGA
1561TCTGTTTGAA CAGCTACTAC TCTTGGTATC ACGACTACGG GCACCTGGAG TTGATTCAGC
1621TGCAGCTGGC CACCCAGTTT GAGAACTGGT ATAAGAAGTA TCAGAAGCCC ATTATTCAGA
1681GCGAGTATGG AGCAGAAACG ATTGCAGGGT TTCACCAGGA TCCACCTCTG ATGTTCACTG
1741AAGAGTACCA GAAAAGTCTG CTAGAGCAGT ACCATCTGGG TCTGGATCAA AAACGCAGAA
1801AATACGTGGT TGGAGAGCTC ATTTGGAATT TTGCCGATTT CATGACTGAA CAGTCACCGA
1861CGAGAGTGCT GGGGAATAAA AAGGGGATCT TCACTCGGCA GAGACAACCA AAAAGTGCAG
1921CGTTCCTTTT GCGAGAGAGA TACTGGAAGA TTGCCAATGA AACCAGGTAT CCCCACTCAG
1981TAGCCAAGTC ACAATGTTTG GAAAACAGCC TGTTTACTTG CCCAACTTTC TTGTACAAAG
2041Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)