Construct: ORF ccsbBroadEn_00914

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016296.1_s300c1, BRDN0000386958
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KPNA5 (3841)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3841 KPNA5 karyopherin subunit alpha 5 NM_001366306.2 100% 100%
2 human 3841 KPNA5 karyopherin subunit alpha 5 NM_002269.3 100% 100%
3 human 3841 KPNA5 karyopherin subunit alpha 5 NM_001366307.2 99.4% 99.4% 0_1insATGGATGCC
4 human 3841 KPNA5 karyopherin subunit alpha 5 NM_001366304.1 96.3% 96.2% 1_57del;59G>T;61_63delCGT
5 human 3841 KPNA5 karyopherin subunit alpha 5 NM_001366305.2 96.3% 96.2% 1_57del;59G>T;61_63delCGT
6 human 3841 KPNA5 karyopherin subunit alpha 5 NM_001366308.1 89.3% 88.6% (many diffs)
7 human 3841 KPNA5 karyopherin subunit alpha 5 XM_017010841.2 61% 59.7% (many diffs)
8 human 3841 KPNA5 karyopherin subunit alpha 5 XM_024446426.1 60.6% 58.8% 0_1ins547;20_21ins89
9 human 3841 KPNA5 karyopherin subunit alpha 5 XM_024446427.1 60.6% 58.8% 0_1ins547;20_21ins89
10 human 3841 KPNA5 karyopherin subunit alpha 5 NM_001366310.2 56.9% 56.9% 921_922ins696
11 human 3841 KPNA5 karyopherin subunit alpha 5 NM_001366309.2 54.8% 54.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1683
ORF length:
1617
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTNTG TACAAAAAAG
61TTGGCATGGA TGCCATGGCT AGTCCAGGGA AAGATAACTA TAGAATGAAA AGTTATAAGA
121ATAAAGCCCT AAATCCTCAA GAGATGCGTA GACGAAGAGA AGAAGAAGGA ATACAGCTTA
181GAAAACAAAA AAGAGAAGAA CAGTTGTTCA AACGCAGAAA TGTCTATTTG CCCAGAAATG
241ATGAATCTAT GCTTGAAAGT CCTATACAGG ATCCAGATAT TAGTTCCACT GTACCCATTC
301CAGAGGAAGA AGTTGTTACT ACAGATATGG TTCAGATGAT TTTTTCTAAT AATGCTGATC
361AACAGCTAAC AGCAACACAG AAATTTAGAA AGCTGCTTTC TAAAGAACCT AATCCACCAA
421TAGATCAAGT TATACAGAAA CCAGGAGTTG TACAGAGATT TGTGAAATTT CTTGAAAGAA
481ATGAAAATTG CACTTTACAA TTTGAAGCTG CATGGGCATT AACAAATATA GCATCTGGAA
541CTTTTCTGCA TACCAAGGTA GTGATTGAAA CTGGGGCTGT TCCGATTTTT ATCAAACTTC
601TTAATTCTGA ACATGAAGAT GTTCAGGAAC AGGCTGTTTG GGCACTTGGT AATATTGCTG
661GTGACAATGC AGAATGCAGA GATTTTGTTT TGAATTGTGA AATACTTCCA CCTCTTTTAG
721AGTTATTAAC AAATTCAAAC AGACTCACAA CAACAAGAAA TGCCGTGTGG GCCCTCTCAA
781ATTTATGTAG AGGCAAAAAC CCTCCTCCAA ACTTTAGTAA GGTTTCACCT TGCTTAAATG
841TCCTGTCACG ACTGTTGTTT AGCAGTGACC CAGATGTGTT AGCAGACGTG TGTTGGGCCC
901TTTCTTATCT CTCCGATGGA CCCAATGATA AAATTCAAGC AGTCATTGAT TCTGGAGTCT
961GTCGAAGATT GGTGGAACTT TTGATGCACA ATGATTATAA AGTTGTATCA CCTGCATTAA
1021GGGCAGTTGG TAATATTGTG ACTGGTGATG ATATTCAAAC ACAGGTAATT TTGAATTGTT
1081CTGCATTACC CTGTCTCTTA CATTTATTGA GTAGCCCAAA GGAGTCAATT AGAAAAGAAG
1141CCTGCTGGAC TGTTTCTAAC ATCACTGCTG GAAATAGAGC TCAGATTCAG GCTGTTATAG
1201ATGCAAATAT TTTTCCTGTT TTGATTGAGA TTCTTCAGAA AGCAGAGTTT CGTACCAGAA
1261AAGAAGCAGC TTGGGCTATA ACTAATGCAA CATCAGGAGG TACTCCAGAG CAAATAAGGT
1321ATTTGGTAGC TTTAGGCTGC ATTAAACCAC TTTGTGATCT TTTGACTGTT ATGGACTCCA
1381AAATAGTCCA AGTGGCTTTA AATGGACTTG AAAATATTTT ACGTCTTGGA GAACAAGAAT
1441CTAAGCAGAA TGGAATAGGC ATTAATCCAT ACTGTGCTCT CATTGAAGAA GCATATGGTC
1501TGGATAAAAT TGAGTTTTTG CAAAGCCATG AAAATCAGGA AATTTACCAG AAGGCATTTG
1561ATCTGATTGA ACATTACTTT GGTGTAGAAG AAGATGACCC CAGCATTGTA CCTCAGGTGG
1621ATGAAAACCA ACAACAGTTT ATATTTCAGC AGCAGGAAGC ACCAATGGAT GGATTTCAAC
1681TTTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1741gcaacgaac

Download FASTA (ORF) (Full)