Construct: ORF ccsbBroadEn_00970
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018082.1_s300c1, BRDN0000387524
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MAGOH (4116)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4116 | MAGOH | mago homolog, exon junction... | NM_002370.4 | 100% | 100% | |
| 2 | human | 55110 | MAGOHB | mago homolog B, exon juncti... | NM_018048.5 | 85.3% | 97.2% | (many diffs) |
| 3 | human | 100506898 | MAGOH2P | mago homolog 2, pseudogene | NR_049723.1 | 64.5% | (many diffs) | |
| 4 | human | 55110 | MAGOHB | mago homolog B, exon juncti... | NM_001300739.2 | 60.7% | 69.8% | (many diffs) |
| 5 | human | 55110 | MAGOHB | mago homolog B, exon juncti... | NM_001319985.1 | 60.7% | 69.8% | (many diffs) |
| 6 | human | 55110 | MAGOHB | mago homolog B, exon juncti... | XM_005253402.2 | 60.7% | 69.8% | (many diffs) |
| 7 | human | 55110 | MAGOHB | mago homolog B, exon juncti... | NR_135120.1 | 13% | (many diffs) | |
| 8 | mouse | 17149 | Magoh | mago homolog, exon junction... | NM_001282737.1 | 91% | 100% | (many diffs) |
| 9 | mouse | 66441 | Magohb | mago homolog B, exon juncti... | NM_025564.2 | 82.6% | 97.9% | (many diffs) |
| 10 | mouse | 66441 | Magohb | mago homolog B, exon juncti... | NM_001327860.1 | 58.6% | 69.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 504
- ORF length:
- 438
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GAGTGACTTT TATCTGCGTT ACTACGTGGG GCACAAGGGC AAGTTCGGCC 121 ACGAGTTCCT GGAGTTTGAG TTTCGACCGG ACGGGAAGTT AAGATATGCC AACAACAGCA 181 ATTACAAGAA TGATGTCATG ATCAGAAAAG AGGCTTATGT ACATAAAAGC GTGATGGAGG 241 AACTGAAGAG AATAATTGAC GACAGTGAAA TTACCAAAGA GGATGATGCA TTGTGGCCTC 301 CTCCTGACCG AGTGGGCCGG CAGGAGCTTG AAATCGTCAT TGGAGATGAA CACATTTCTT 361 TTACAACATC AAAAATTGGT TCCCTTATTG ATGTCAATCA ATCCAAGGAT CCAGAAGGCT 421 TACGAGTATT TTATTATCTT GTCCAGGACC TGAAGTGTTT GGTCTTCAGT CTTATTGGAT 481 TACACTTCAA GATTAAACCA ATCTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 541 agcattgctt atcaatttgt tgcaacgaac