Construct: ORF ccsbBroadEn_00972
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013842.1_s300c1, BRDN0000390904
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MAN2C1 (4123)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4123 | MAN2C1 | mannosidase alpha class 2C ... | NM_006715.4 | 100% | 100% | |
| 2 | human | 4123 | MAN2C1 | mannosidase alpha class 2C ... | NM_001256494.1 | 98.3% | 94.6% | 1947_1959del;2058_2095del |
| 3 | human | 4123 | MAN2C1 | mannosidase alpha class 2C ... | NM_001256495.1 | 97.7% | 97.7% | 2736_2737ins69 |
| 4 | human | 4123 | MAN2C1 | mannosidase alpha class 2C ... | NM_001256496.1 | 90.4% | 90.4% | 598_599ins297 |
| 5 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | NM_028636.2 | 87% | 89.9% | (many diffs) |
| 6 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XM_006511499.3 | 84% | 84.3% | (many diffs) |
| 7 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XM_006511495.3 | 82.6% | 85.2% | (many diffs) |
| 8 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XM_006511494.3 | 81.8% | 84.4% | (many diffs) |
| 9 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XM_006511493.3 | 79.6% | 82.1% | (many diffs) |
| 10 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XM_017313619.1 | 78.9% | 81.3% | (many diffs) |
| 11 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XM_017313622.1 | 77% | 78.5% | (many diffs) |
| 12 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XM_011242824.2 | 76.9% | 79.1% | (many diffs) |
| 13 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XM_017313621.1 | 74.9% | 76.2% | (many diffs) |
| 14 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XM_017313624.1 | 74% | 75.2% | (many diffs) |
| 15 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XM_017313620.1 | 72.1% | 73.4% | (many diffs) |
| 16 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XM_017313623.1 | 72% | 73% | (many diffs) |
| 17 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XM_006511496.2 | 69% | 71.4% | (many diffs) |
| 18 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_001779030.1 | 68.6% | (many diffs) | |
| 19 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_001779025.1 | 66.3% | (many diffs) | |
| 20 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XM_017313626.1 | 66.1% | 68% | (many diffs) |
| 21 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_001779027.1 | 64.6% | (many diffs) | |
| 22 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_001779028.1 | 64.6% | (many diffs) | |
| 23 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XM_017313625.1 | 64.3% | 66.1% | (many diffs) |
| 24 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_001779026.1 | 64.3% | (many diffs) | |
| 25 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_001779038.1 | 64% | (many diffs) | |
| 26 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_001779029.1 | 62.2% | (many diffs) | |
| 27 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_001779033.1 | 61.8% | (many diffs) | |
| 28 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_001779034.1 | 61.6% | (many diffs) | |
| 29 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_001779032.1 | 60.7% | (many diffs) | |
| 30 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_001779031.1 | 58.9% | (many diffs) | |
| 31 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_001779040.1 | 58.9% | (many diffs) | |
| 32 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_001779039.1 | 58.8% | (many diffs) | |
| 33 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_379466.3 | 57.3% | (many diffs) | |
| 34 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_001779036.1 | 57.1% | (many diffs) | |
| 35 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_001779037.1 | 57.1% | (many diffs) | |
| 36 | mouse | 73744 | Man2c1 | mannosidase, alpha, class 2... | XR_001779035.1 | 54.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3186
- ORF length:
- 3120
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCTGCGCCG GCCTTGAAGC ACTGGCGCAC CACGCTGGAG CGGGTGGAGA 121 AGTTCGTGTC GCCGCTCTAC TTTACCGACT GTAACCTCCG CGGCAGGCTT TTTGGGGCCA 181 GCTGCCCTGT GGCTGTGCTC TCCAGCTTCC TGACGCCGGA GAGACTTCCC TACCAGGAGG 241 CAGTCCAGCG GGACTTCCGC CCCGCGCAGG TCGGCGACAG CTTCGGACCC ACATGGTGGA 301 CCTGCTGGTT CCGGGTGGAG CTGACCATCC CAGAGGCATG GGTGGGCCAG GAAGTTCACC 361 TTTGCTGGGA AAGTGATGGA GAAGGTCTGG TGTGGCGTGA TGGAGAACCT GTCCAGGGTT 421 TAACCAAAGA GGGTGAGAAG ACCAGCTATG TCCTGACTGA CAGGCTGGGG GAAAGAGACC 481 CCCGAAGCCT CACTCTCTAT GTGGAAGTAG CCTGCAATGG GCTCCTGGGG GCCGGGAAGG 541 GAAGCATGAT TGCAGCCCCT GACCCTGAGA AGATGTTCCA GCTGAGCCGG GCTGAGCTAG 601 CTGTGTTCCA CCGGGATGTC CACATGCTCC TGGTGGATCT GGAGCTGCTG CTGGGCATAG 661 CCAAGGGCCT CGGGAAGGAC AACCAGCGCA GCTTCCAGGC CCTGTACACA GCCAATCAGA 721 TGGTGAACGT GTGTGACCCT GCCCAGCCCG AGACCTTCCC AGTGGCCCAG GCCCTGGCCT 781 CCAGGTTCTT TGGCCAACAT GGGGGTGAAA GCCAACACAC CATTCATGCC ACAGGGCACT 841 GCCACATTGA TACAGCCTGG CTTTGGCCCT TCAAAGAGAC TGTGAGGAAA TGTGCCCGGA 901 GCTGGGTGAC CGCCCTGCAG CTCATGGAGC GGAACCCTGA GTTCATCTTT GCCTGCTCCC 961 AGGCGCAGCA GCTGGAATGG GTGAAGAGCC GCTACCCTGG CCTGTACTCC CGCATCCAGG 1021 AGTTTGCGTG CCGTGGGCAG TTTGTGCCTG TGGGGGGCAC CTGGGTGGAG ATGGATGGGA 1081 ACCTGCCCAG TGGAGAGGCC ATGGTGAGGC AGTTTTTGCA GGGCCAGAAC TTCTTTCTGC 1141 AGGAGTTTGG GAAGATGTGC TCTGAGTTCT GGCTGCCGGA CACCTTTGGC TACTCAGCAC 1201 AGCTCCCCCA GATCATGCAC GGCTGTGGCA TCAGGCGCTT TCTCACCCAG AAATTGAGCT 1261 GGAATTTGGT GAACTCCTTC CCACACCATA CATTTTTCTG GGAGGGCCTG GATGGCTCCC 1321 GTGTACTGGT CCACTTCCCA CCTGGCGACT CCTATGGGAT GCAGGGCAGC GTGGAGGAGG 1381 TGCTGAAGAC CGTGGCCAAC AACCGGGACA AGGGGCGGGC CAACCACAGT GCCTTCCTCT 1441 TTGGCTTTGG GGATGGGGGT GGTGGCCCCA CCCAGACCAT GCTGGACCGC CTGAAGCGCC 1501 TGAGCAATAC GGATGGGCTG CCCAGGGTGC AGCTATCTTC TCCAAGACAG CTCTTCTCAG 1561 CACTGGAGAG TGACTCAGAG CAGCTGTGCA CGTGGGTTGG GGAGCTCTTC TTGGAGCTGC 1621 ACAATGGCAC ATACACCACC CATGCCCAGA TCAAGAAGGG GAACCGGGAA TGTGAGCGGA 1681 TCCTGCACGA CGTGGAGCTG CTCAGTAGCC TGGCCCTGGC CCGCAGTGCC CAGTTCCTAT 1741 ACCCAGCAGC CCAGCTGCAG CACCTCTGGA GGCTCCTTCT TCTGAACCAG TTCCATGATG 1801 TGGTGACTGG AAGCTGCATC CAGATGGTGG CAGAGGAAGC CATGTGCCAT TATGAAGACA 1861 TCCGTTCCCA TGGCAATACA CTGCTCAGCG CTGCAGCCGC AGCCCTGTGT GCTGGGGAGC 1921 CAGGTCCTGA GGGCCTCCTC ATCGTCAACA CACTGCCCTG GAAGCGGATC GAAGTGATGG 1981 CCCTGCCCAA ACCGGGCGGG GCCCACAGCC TAGCCCTGGT GACAGTGCCC AGCATGGGCT 2041 ATGCTCCTGT TCCTCCCCCC ACCTCACTGC AGCCCCTGCT GCCCCAGCAG CCTGTGTTCG 2101 TAGTGCAAGA GACTGATGGC TCCGTGACTC TGGACAATGG CATCATCCGA GTGAAGCTGG 2161 ACCCAACTGG TCGCCTGACG TCCTTGGTCC TGGTGGCCTC TGGCAGGGAG GCCATTGCTG 2221 AGGGCGCCGT GGGGAACCAG TTTGTGCTAT TTGATGATGT CCCCTTGTAC TGGGATGCAT 2281 GGGACGTCAT GGACTACCAC CTGGAGACAC GGAAGCCTGT GCTGGGCCAG GCAGGGACCC 2341 TGGCAGTGGG CACCGAGGGC GGCCTGCGGG GCAGCGCCTG GTTCTTGCTA CAGATCAGCC 2401 CCAACAGTCG GCTTAGCCAG GAGGTTGTGC TGGACGTTGG CTGCCCCTAT GTCCGCTTCC 2461 ACACCGAGGT ACACTGGCAT GAGGCCCACA AGTTCCTGAA GGTGGAGTTC CCTGCTCGCG 2521 TGCGGAGTTC CCAGGCCACC TATGAGATCC AGTTTGGGCA CCTGCAGCGA CCTACCCACT 2581 ACAATACCTC TTGGGACTGG GCTCGATTTG AGGTGTGGGC CCATCGCTGG ATGGATCTGT 2641 CAGAACACGG CTTTGGGCTG GCCCTGCTCA ACGACTGCAA GTATGGCGCG TCAGTGCGAG 2701 GCAGCATCCT CAGCCTCTCG CTCTTGCGGG CGCCTAAAGC CCCGGACGCT ACTGCTGACA 2761 CGGGGCGCCA CGAGTTCACC TATGCACTGA TGCCGCACAA GGGCTCTTTC CAGGATGCTG 2821 GCGTTATCCA AGCTGCCTAC AGCCTAAACT TCCCCCTGTT GGCTCTGCCA GCCCCCAGCC 2881 CAGCGCCCGC CACCTCCTGG AGTGCGTTTT CCGTGTCTTC ACCCGCGGTC GTATTGGAGA 2941 CCGTCAAGCA GGCGGAGAGC AGCCCCCAGC GCCGCTCGCT GGTCCTGAGG CTGTATGAGG 3001 CCCACGGCAG CCACGTGGAC TGCTGGCTGC ACTTGTCGCT GCCGGTTCAG GAGGCCATCC 3061 TCTGCGATCT CTTGGAGCGA CCAGACCCTG CTGGCCACTT GACCCTTCGG GACAACCGCC 3121 TGAAGCTCAC CTTTTCTCCC TTCCAAGTGC TGTCCCTGTT GCTCGTGCTT CAGCCTCCGC 3181 CACACTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 3241 gttgcaacga ac