Construct: ORF ccsbBroadEn_01030
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013815.1_s300c1, BRDN0000389814
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MOV10 (4343)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4343 | MOV10 | Mov10 RISC complex RNA heli... | NM_001130079.2 | 100% | 100% | |
| 2 | human | 4343 | MOV10 | Mov10 RISC complex RNA heli... | NM_001321324.1 | 100% | 100% | |
| 3 | human | 4343 | MOV10 | Mov10 RISC complex RNA heli... | NM_001369507.1 | 100% | 100% | |
| 4 | human | 4343 | MOV10 | Mov10 RISC complex RNA heli... | NM_020963.4 | 100% | 100% | |
| 5 | human | 4343 | MOV10 | Mov10 RISC complex RNA heli... | NM_001286072.1 | 94.4% | 94.4% | 0_1ins168 |
| 6 | human | 4343 | MOV10 | Mov10 RISC complex RNA heli... | XM_005270869.4 | 94.4% | 94.4% | 0_1ins168 |
| 7 | human | 4343 | MOV10 | Mov10 RISC complex RNA heli... | XM_005270870.5 | 94.4% | 94.4% | 0_1ins168 |
| 8 | human | 4343 | MOV10 | Mov10 RISC complex RNA heli... | XM_017001318.2 | 94.4% | 94.4% | 0_1ins168 |
| 9 | human | 4343 | MOV10 | Mov10 RISC complex RNA heli... | XM_017001319.2 | 90% | 86.5% | (many diffs) |
| 10 | human | 4343 | MOV10 | Mov10 RISC complex RNA heli... | XR_001737187.2 | 85.1% | 1_116del;2698_2874del;3303_3532del | |
| 11 | human | 4343 | MOV10 | Mov10 RISC complex RNA heli... | XR_946657.2 | 84% | 1_116del;2698_2924del;3353_3582del | |
| 12 | human | 4343 | MOV10 | Mov10 RISC complex RNA heli... | XM_024447137.1 | 83.9% | 82.9% | (many diffs) |
| 13 | human | 4343 | MOV10 | Mov10 RISC complex RNA heli... | XR_001737185.2 | 83.7% | 1_116del;2622_2857del;3362_3591del | |
| 14 | human | 4343 | MOV10 | Mov10 RISC complex RNA heli... | XR_001737186.2 | 78.8% | (many diffs) | |
| 15 | mouse | 17454 | Mov10 | Moloney leukemia virus 10 | NM_001163441.1 | 87.8% | 91.1% | (many diffs) |
| 16 | mouse | 17454 | Mov10 | Moloney leukemia virus 10 | NM_008619.2 | 87.8% | 91.1% | (many diffs) |
| 17 | mouse | 17454 | Mov10 | Moloney leukemia virus 10 | XM_006501100.1 | 87.8% | 91.1% | (many diffs) |
| 18 | mouse | 17454 | Mov10 | Moloney leukemia virus 10 | XM_006501101.3 | 87.8% | 91.1% | (many diffs) |
| 19 | mouse | 17454 | Mov10 | Moloney leukemia virus 10 | NM_001163440.1 | 81.9% | 84.9% | (many diffs) |
| 20 | mouse | 17454 | Mov10 | Moloney leukemia virus 10 | XR_375493.3 | 76.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3075
- ORF length:
- 3009
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TGCAAAAAAG 61 TTGGCATGCC CAGTAAGTTC AGCTGCCGGC AGCTCCGGGA GGCGGGCCAG TGTTTCGAGA 121 GTTTCCTGGT CGTTCGGGGA CTGGACATGG AGACAGATCG CGAGCGGCTG CGGACCATTT 181 ATAACCGCGA CTTCAAGATC AGCTTTGGGA CCCCCGCCCC TGGCTTCTCC TCCATGCTGT 241 ATGGAATGAA GATTGCAAAT CTGGCCTACG TCACCAAGAC TCGGGTCAGG TTCTTCAGAC 301 TCGACCGCTG GGCCGACGTG CGGTTCCCAG AAAAGAGGAG AATGAAGCTG GGGTCAGATA 361 TCAGCAAACA CCACAAGTCA CTGCTAGCCA AGATCTTTTA TGACAGGGCT GAGTATCTTC 421 ATGGGAAACA TGGTGTGGAT GTGGAAGTCC AGGGGCCCCA TGAAGCCCGA GATGGGCAGC 481 TCCTTATCCG CCTGGATTTG AACCGCAAAG AGGTGCTGAC CCTGAGGCTT CGGAATGGCG 541 GAACCCAGTC TGTTACCCTC ACTCACCTCT TCCCACTCTG CCGGACACCC CAGTTTGCTT 601 TCTACAATGA AGACCAGGAG TTGCCCTGTC CACTGGGCCC CGGTGAATGC TATGAACTCC 661 ATGTCCATTG TAAGACCAGC TTTGTGGGCT ACTTCCCAGC CACAGTGCTC TGGGAGCTGC 721 TGGGACCTGG GGAGTCGGGT TCAGAAGGAG CCGGCACATT CTACATTGCC CGCTTCTTGG 781 CTGCCGTCGC CCACAGCCCC CTGGCTGCAC AGCTGAAGCC CATGACTCCC TTCAAGCGGA 841 CCCGGATCAC CGGAAACCCT GTGGTGACCA ATCGGATAGA GGAAGGAGAG AGACCTGACC 901 GCGCTAAGGG CTATGACCTG GAGTTAAGTA TGGCGCTGGG GACATACTAC CCACCTCCCC 961 GCCTCAGGCA GCTGCTCCCC ATGCTTCTTC AGGGAACAAG TATCTTCACT GCCCCTAAGG 1021 AGATCGCAGA GATCAAGGCC CAGCTGGAGA CAGCCCTGAA GTGGAGGAAC TATGAGGTGA 1081 AGCTGCGGCT GCTGCTGCAC CTGGAGGAAC TGCAGATGGA GCATGATATC CGGCACTATG 1141 ACCTGGAGTC GGTGCCCATG ACCTGGGACC CTGTGGACCA GAACCCCAGG CTGCTCACGC 1201 TGGAGGTTCC TGGAGTGACT GAGAGCCGCC CCTCAGTGCT ACGGGGCGAC CACCTGTTTG 1261 CCCTTTTGTC CTCGGAGACA CACCAGGAGG ACCCCATCAC ATATAAGGGC TTTGTGCACA 1321 AGGTGGAATT GGACCGTGTC AAGCTGAGCT TTTCCATGAG CCTCCTGAGC CGCTTTGTGG 1381 ATGGGCTGAC CTTCAAGGTG AACTTTACCT TCAACCGCCA GCCGCTGCGA GTCCAGCACC 1441 GTGCCCTGGA GCTGACAGGG CGCTGGCTGC TGTGGCCCAT GCTCTTTCCT GTGGCACCTC 1501 GGGACGTCCC GCTGCTGCCC TCAGATGTGA AACTCAAGCT GTACGACCGG AGTCTGGAGT 1561 CAAACCCAGA GCAGCTGCAG GCCATGAGGC ACATTGTTAC GGGCACCACC CGTCCAGCCC 1621 CCTACATCAT CTTTGGGCCT CCAGGCACCG GCAAGACTGT CACGTTAGTG GAGGCAATTA 1681 AGCAGGTGGT GAAGCACTTG CCCAAAGCCC ACATCTTGGC CTGCGCTCCA TCCAACTCAG 1741 GGGCTGACCT ACTCTGTCAA AGGCTCCGGG TCCACCTTCC TAGCTCCATC TACCGCCTCC 1801 TGGCCCCCAG CAGGGACATC CGCATGGTAC CTGAGGACAT CAAGCCCTGC TGCAACTGGG 1861 ACGCAAAGAA GGGGGAGTAT GTATTTCCCG CCAAGAAGAA GCTGCAGGAA TACCGGGTCT 1921 TAATTACCAC CCTCATCACT GCCGGCAGGT TGGTCTCGGC CCAGTTTCCC ATTGATCACT 1981 TCACACACAT CTTCATCGAT GAGGCTGGCC ACTGCATGGA GCCTGAGAGT CTGGTAGCTA 2041 TAGCAGGGCT GATGGAAGTA AAGGAAACAG GTGATCCAGG AGGGCAGCTG GTGCTGGCAG 2101 GAGACCCTCG GCAGCTGGGG CCTGTGCTGC GTTCCCCACT GACCCAGAAG CATGGACTGG 2161 GATACTCACT GCTGGAGCGG CTGCTCACCT ACAACTCCCT GTACAAGAAG GGCCCTGATG 2221 GCTATGACCC CCAGTTCATA ACCAAGCTGC TCCGCAACTA CAGGTCTCAT CCCACCATCC 2281 TGGACATTCC TAACCAGCTC TATTATGAAG GGGAGCTGCA GGCCTGTGCT GATGTCGTGG 2341 ATCGAGAACG CTTCTGCCGC TGGGCGGGCC TACCTCGACA GGGCTTTCCC ATCATCTTTC 2401 ACGGCGTAAT GGGCAAAGAT GAGCGTGAAG GCAACAGCCC ATCCTTCTTC AACCCTGAAG 2461 AGGCTGCCAC AGTGACTTCC TACCTGAAGC TGCTCCTGGC CCCCTCCTCC AAGAAGGGCA 2521 AAGCTCGCCT GAGCCCTCGA AGTGTGGGCG TCATCTCCCC GTACCGGAAA CAGGTGGAGA 2581 AAATCCGTTA CTGCATCACC AAACTTGACA GGGAGCTTCG AGGACTGGAT GACATCAAGG 2641 ACTTGAAGGT GGGTTCAGTA GAAGAATTCC AAGGCCAAGA ACGAAGCGTC ATCCTCATCT 2701 CCACCGTGCG AAGCAGCCAG AGCTTTGTGC AGCTGGATCT GGACTTTAAT CTGGGTTTCC 2761 TTAAGAACCC CAAGAGGTTC AATGTAGCTG TGACCCGGGC CAAGGCCCTG CTCATCATCG 2821 TGGGGAACCC CCTTCTCCTG GGCCATGACC CTGACTGGAA AGTATTCCTG GAGTTCTGTA 2881 AAGAAAACGG AGGGTATACC GGGTGTCCCT TCCCTGCCAA ACTGGACCTG CAACAGGGAC 2941 AGAATTTACT GCAAGGTCTG AGCAAGCTCA GCCCCTCTAC CTCAGGGCCC CACAGCCATG 3001 ACTACCTCCC CCAGGAGCGG GAGGGTGAAG GGGGCCTGTC TCTGCAAGTG GAGCCAGAGT 3061 GGAGGAATGA GCTCTGCCCA ACTTTTTTGT ACAAAGTtgg cattataaga aagcattgct 3121 tatcaatttg ttgcaacgaa c