Construct: ORF ccsbBroadEn_01124
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007690.1_s300c1, BRDN0000398437
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR3A1 (4994)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4994 | OR3A1 | olfactory receptor family 3... | NM_002550.2 | 100% | 100% | |
| 2 | human | 4994 | OR3A1 | olfactory receptor family 3... | XM_017024695.1 | 100% | 100% | |
| 3 | human | 4994 | OR3A1 | olfactory receptor family 3... | XM_017024696.1 | 100% | 100% | |
| 4 | human | 4995 | OR3A2 | olfactory receptor family 3... | NM_002551.3 | 83.2% | 79.7% | (many diffs) |
| 5 | human | 4995 | OR3A2 | olfactory receptor family 3... | XM_017024697.1 | 82.7% | 79.2% | (many diffs) |
| 6 | human | 4995 | OR3A2 | olfactory receptor family 3... | XM_017024698.1 | 82.7% | 79.2% | (many diffs) |
| 7 | human | 4995 | OR3A2 | olfactory receptor family 3... | XM_024450776.1 | 82.7% | 79.2% | (many diffs) |
| 8 | human | 8392 | OR3A3 | olfactory receptor family 3... | XM_011524028.2 | 81.5% | 77.4% | (many diffs) |
| 9 | human | 8392 | OR3A3 | olfactory receptor family 3... | NM_012373.2 | 80.1% | 76% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1014
- ORF length:
- 945
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCAGCCAGAA TCTGGGGCCA ATGGAACAGT CATTGCTGAG TTCATCCTGC 121 TGGGCTTGCT GGAGGCGCCA GGGCTGCAGC CAGTTGTCTT TGTGCTCTTC CTCTTTGCCT 181 ACCTGGTCAC GGTCAGGGGC AACCTCAGCA TCCTGGCAGC TGTCTTGGTG GAGCCCAAAC 241 TCCACACCCC CATGTACTTC TTCCTGGGGA ACCTATCAGT GCTGGATGTT GGGTGCATCA 301 GCGTCACTGT TCCATCAATG TTGAGTCGTC TCCTGTCCCG CAAGCGTGCA GTTCCCTGTG 361 GGGCCTGCCT TACCCAGCTC TTCTTCTTCC ATCTGTTCGT TGGAGTGGAC TGCTTCCTGC 421 TGACCGCCAT GGCCTATGAC CGATTCCTGG CCATCTGCCG GCCCCTCACC TACAGCACCC 481 GCATGAGTCA GACAGTCCAG AGGATGTTGG TGGCTGCGTC CTGGGCTTGT GCTTTCACCA 541 ACGCACTGAC CCACACTGTG GCCATGTCCA CGCTCAACTT CTGTGGCCCC AATGTGATCA 601 ATCACTTCTA CTGTGACCTC CCACAGCTCT TCCAGCTCTC CTGCTCCAGC ACCCAACTCA 661 ATGAGCTGCT GCTTTTTGCT GTGGGTTTTA TAATGGCAGG TACCCCCATG GCTCTCATTG 721 TCATCTCCTA TATCCACGTG GCAGCTGCAG TCCTGCGAAT TCGCTCTGTA GAGGGCAGGA 781 AGAAAGCCTT CTCCACATGT GGCTCCCACC TCACTGTGGT TGCCATATTC TATGGTTCAG 841 GTATCTTTAA CTATATGCGA CTGGGTTCAA CCAAGCTTTC AGACAAGGAT AAAGCTGTTG 901 GAATTTTCAA CACTGTCATC AATCCCATGC TGAACCCAAT CATCTACAGC TTCAGAAACC 961 CTGATGTGCA GAGTGCCATC TGGAGGATGC TCACAGGGAG GCGGTCACTG GCTTTGCCAA 1021 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac