Transcript: Human XM_017024695.1

PREDICTED: Homo sapiens olfactory receptor family 3 subfamily A member 1 (OR3A1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
OR3A1 (4994)
Length:
4356
CDS:
92..1039

Additional Resources:

NCBI RefSeq record:
XM_017024695.1
NBCI Gene record:
OR3A1 (4994)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017024695.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000357840 TCTATGGTTCAGGTATCTTTA pLKO_005 852 CDS 100% 13.200 18.480 N OR3A1 n/a
2 TRCN0000357839 AGCGTCACTGTTCCATCAATG pLKO_005 323 CDS 100% 10.800 15.120 N OR3A1 n/a
3 TRCN0000009389 CAGCGTCACTGTTCCATCAAT pLKO.1 322 CDS 100% 5.625 7.875 N OR3A1 n/a
4 TRCN0000009387 CCATATTCTATGGTTCAGGTA pLKO.1 846 CDS 100% 2.640 3.696 N OR3A1 n/a
5 TRCN0000357838 ACAGTCATTGCTGAGTTCATC pLKO_005 119 CDS 100% 4.950 3.465 N OR3A1 n/a
6 TRCN0000009390 GACTGGGTTCAACCAAGCTTT pLKO.1 882 CDS 100% 4.950 3.465 N OR3A1 n/a
7 TRCN0000009388 GCTCTCATTGTCATCTCCTAT pLKO.1 734 CDS 100% 4.950 3.465 N OR3A1 n/a
8 TRCN0000357913 CATGGCTCTCATTGTCATCTC pLKO_005 730 CDS 100% 4.050 2.430 N OR3A1 n/a
9 TRCN0000009391 GCCAGTTGTCTTTGTGCTCTT pLKO.1 172 CDS 100% 4.050 2.025 Y OR3A1 n/a
10 TRCN0000583868 GCCATGGCCTATGACCGATAT pLKO_005 449 CDS 100% 10.800 5.400 Y OR2T3 n/a
11 TRCN0000187100 CCCAATGTGATCAATCACTAT pLKO.1 611 CDS 100% 4.950 2.475 Y OR4X2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017024695.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01124 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01124 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000473068 CCAGCTACATCAAGATTACCTAGT pLX_317 42.9% 100% 100% V5 n/a
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