Construct: ORF ccsbBroadEn_01217
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010506.1_s300c1, BRDN0000388624
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PLGLB2 (5342)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5343 | PLGLB1 | plasminogen like B1 | NM_001032392.2 | 100% | 100% | |
| 2 | human | 5342 | PLGLB2 | plasminogen like B2 | NM_002665.4 | 100% | 100% | |
| 3 | human | 5340 | PLG | plasminogen | NM_001168338.1 | 68.6% | 67.6% | (many diffs) |
| 4 | human | 285189 | PLGLA | plasminogen like A (pseudog... | NR_003506.3 | 33.4% | (many diffs) | |
| 5 | human | 5340 | PLG | plasminogen | NM_000301.3 | 11.5% | 11.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 354
- ORF length:
- 288
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA ACATAAGGAA GTGGTTCTTC TACTTCTTTT ATTTCTGAAA TCAGGTCAAG 121 GAGAGCCCCT GGATGACTAT GTGAATACCC AGGGGCCTTC ACTGTTCAGT GTCACTAAGA 181 AGCAGCTGGG GGCAGGAAGC AGAGAAGAAT GTGCAGCAAA ATGTGAAGAG GACAAAGAAT 241 TCACCTGCAG GGCATTCCAA TATCACAGTA AAGAGCAACA ATGTGTGATA ATGGCTGAAA 301 ACAGGAAGTC CTCCATAATC ATTAGGATGA GAGATGCAGT TTTATTTGAA AAGTACCCAA 361 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac